Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04420 640 / 0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) AT3G05420 462 / 5e-156 ACBP4 acyl-CoA binding protein 4 (.1.2) AT5G27630 449 / 3e-151 ACBP5 acyl-CoA binding protein 5 (.1) AT5G18590 200 / 9e-56 Galactose oxidase/kelch repeat superfamily protein (.1.2) AT1G18610 122 / 2e-29 Galactose oxidase/kelch repeat superfamily protein (.1) AT1G74150 112 / 8e-26 Galactose oxidase/kelch repeat superfamily protein (.1) AT2G36360 88 / 3e-18 Galactose oxidase/kelch repeat superfamily protein (.1.2.3.4.5) AT4G04670 79 / 5e-15 Met-10+ like family protein / kelch repeat-containing protein (.1) AT1G68050 78 / 6e-15 ADO3, FKF1 "flavin-binding, kelch repeat, f box 1", flavin-binding, kelch repeat, f box 1 (.1) AT3G07720 75 / 2e-14 Galactose oxidase/kelch repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038666 [exp] 971 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10017457 [exp] 770 / 0 AT5G04420 610 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10028825 [exp] 764 / 0 AT5G04420 622 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Lus10029902 [exp] 467 / 7e-158 AT3G05420 1040 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10004499 [exp] 446 / 2e-149 AT3G05420 1019 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10031497 [exp] 441 / 1e-147 AT3G05420 1027 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10015176 [exp] 440 / 3e-147 AT3G05420 1024 / 0.0 acyl-CoA binding protein 4 (.1.2) Lus10034163 [exp] 187 / 2e-51 AT5G18590 785 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Lus10043420 [exp] 172 / 7e-46 AT5G18590 611 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031200 [exp] 751 / 0 AT5G04420 655 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.010G230300 [exp] 731 / 0 AT5G04420 657 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G026900 [exp] 450 / 4e-151 AT3G05420 1005 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.013G018800 [exp] 449 / 4e-151 AT3G05420 999 / 0.0 acyl-CoA binding protein 4 (.1.2) Potri.008G214900 [exp] 216 / 1e-61 AT5G18590 819 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.010G022000 [exp] 215 / 2e-61 AT5G18590 811 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1.2) Potri.008G030901 [exp] 182 / 1e-54 AT5G04420 120 / 1e-32 Galactose oxidase/kelch repeat superfamily protein (.1.2.3) Potri.005G013000 [exp] 128 / 4e-31 AT1G18610 172 / 2e-46 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.013G008200 [exp] 126 / 1e-30 AT1G74150 200 / 3e-56 Galactose oxidase/kelch repeat superfamily protein (.1) Potri.012G062100 [exp] 116 / 2e-27 AT1G18610 631 / 0.0 Galactose oxidase/kelch repeat superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0186 [flax] [poplar] Beta_propeller PF07646 [flax] [poplar] Kelch_2 Kelch motif
Representative CDS sequence Show only first row Show all	>Lus10037933 pacid=23163689 polypeptide=Lus10037933 locus=Lus10037933.g ID=Lus10037933.BGIv1.0 annot-version=v1.0 ATGCAGGCTAAGGAGCTTAGAGCTAGGTGGGCCCACCGAACAAGACACGGACTCCCAATTCTCCAACTTCGAACCTCATTGCTCTACCGGACGAGTGGGC AGAACCAACTAATTGCTCGATCGGAAATAGAGGGCGGAACGGGAATTTCACCAGAAATAGTAGCGCATAAAGCTTCTATGAGACCTGAGGATATGGAGGG TGTAGATGGGGGTAATTGGTTTTCACAATTGGCGTATGAACAGTGGGAGCCAATTCCTGTTTTTGGCCCAAGACCATCAGCTCGCTACAAGCATGCCTCT GCAATCAATGGATATAAGTTATACATATTTGGCGGTAGTCGTAATGGTCGGTACCTATCTGATATACAGGTCTTTGATTTTGGAAGTTTGACTTGGTCTA GCCTTAAACCCAAAATTGAATTGAACGGTCATGGAGTTGAGGAAAACAGATCACAAGAAACTCTTCCAGCCATGTCAGACCACAGCATGGTGGTATGGGG AAACAAACTGCTGCTACTCAGTGGCCATTCCAAAGACTCTTCTGAAAGCATGATAGTGCACTTCATAAATTTGGAAACACAACAATGTGGTATCCTTGAA ACCTCAGGAAAATTTCCATGTGCTCGAGGGGGATACTCTGCTACCCTTGTTGGTTCTAGGCTGGTGATTTTTGGTGGAGAAGATAGAAGTAGGAAACTGT TGAATGACATACATATCCTTAATATTGAAACATTGACGTGGGATTTGGTGGAAACCATGCAGACATCTCCAGTTCCACGATTTGACCACACGGCAGCAGT ACATGCAGAGCGCTACCTTTTGGTATTTGGTGGTTGTTCTCATTCTATATTCTTCAACGATCTTCATGTACTTGACCTGCAGACTTTGGAGTGGAGCCAG CCGGAGATTCAAGGAGACTTGGTGACTCCTCGGGCTGGTCACACTGGCGTAACCATTGGTGAGAATTGGTATATCGTGGGTGGTGGAGATAATAAGAACG GTTCTTTAGAGACTCTTTCATTAAATATGTCCAAGCTTGCATGGTCGACGTTGACCAGTGTGAAGGAAAGGCATCCACTTGCCAGTGAGGGGCTAAGTGT TTGCTCAGCATTCATCAATGGGGAGAAGCACTTGGTTGCTTTTGGTGGATATAATGGGAAATATACCAACGAGGTTTTTGTTCTGCGACTGAAACCGAGA GACACGTTACGGCCCAAGATTTTTCAGTCACCAGCAGCTGCTGCTGCTGCTGCCTCTGTTACAGCTGCATACGCGTTGGCTAAATCTGAGAAGTTGGATA TTTCCTACTTGGCTGTAAATCCTAGAGAACAAGGGAAAAAGCCTTCTCAGGAAGATCTCGGTATCGAAATTGATGCAATCAAAGAAGACAAAAAGATGCT GGAAGCGTCACTAGCAGACGTCAAAGCAGAGAATTCTAGGAACAGAGAAAAGATCGATGAAGTTAACAGTACCCATGCTGATCTATCCAAGGAACTCCAT TCTGTCCAAGGACAATTGGTGGCTGAAAGATCTAGATGCTTCAAACTCGAGGCACAAATTGCTGAGCTGCAGAAAGCCCTAGAGTCATTGCAGTCCATAG AGACTGAAGTCCAACTACTCCGGAGACAGAAAGCGGTGATTGAGCAGGAGATTGAAATGAATGCAAGCGCACAAAGGCAAGGCTCCGGTGTCTGGCGTTG GATAGCTGGGTGA
AA sequence Show only first row Show all	>Lus10037933 pacid=23163689 polypeptide=Lus10037933 locus=Lus10037933.g ID=Lus10037933.BGIv1.0 annot-version=v1.0 MQAKELRARWAHRTRHGLPILQLRTSLLYRTSGQNQLIARSEIEGGTGISPEIVAHKASMRPEDMEGVDGGNWFSQLAYEQWEPIPVFGPRPSARYKHAS AINGYKLYIFGGSRNGRYLSDIQVFDFGSLTWSSLKPKIELNGHGVEENRSQETLPAMSDHSMVVWGNKLLLLSGHSKDSSESMIVHFINLETQQCGILE TSGKFPCARGGYSATLVGSRLVIFGGEDRSRKLLNDIHILNIETLTWDLVETMQTSPVPRFDHTAAVHAERYLLVFGGCSHSIFFNDLHVLDLQTLEWSQ PEIQGDLVTPRAGHTGVTIGENWYIVGGGDNKNGSLETLSLNMSKLAWSTLTSVKERHPLASEGLSVCSAFINGEKHLVAFGGYNGKYTNEVFVLRLKPR DTLRPKIFQSPAAAAAAASVTAAYALAKSEKLDISYLAVNPREQGKKPSQEDLGIEIDAIKEDKKMLEASLADVKAENSRNREKIDEVNSTHADLSKELH SVQGQLVAERSRCFKLEAQIAELQKALESLQSIETEVQLLRRQKAVIEQEIEMNASAQRQGSGVWRWIAG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04420			Galactose oxidase/kelch repeat...		Lus10037933 [exp]	0	1
AT1G62330			O-fucosyltransferase family pr...		Lus10015558 [exp]	1.4	0.7524
AT5G40830		ATRAD3, ATATR	S-adenosyl-L-methionine-depend...		Lus10007588 [exp]	7.3	0.7320
AT2G24400			SAUR-like auxin-responsive pro...		Lus10026977 [exp]	16.2	0.6862
AT3G04950			unknown protein		Lus10000934 [exp]	19.0	0.6748
AT2G17080			Arabidopsis protein of unknown...		Lus10023962 [exp]	22.0	0.7006
AT3G27670		RST1	RESURRECTION1, ARM repeat supe...		Lus10013076 [exp]	27.9	0.6795
AT5G53130		ATCNGC1, CNGC1	CYCLIC NUCLEOTIDE-GATED CHANNE...		Lus10038308 [exp]	34.9	0.6484
AT2G45320			unknown protein		Lus10030280 [exp]	36.1	0.6938
AT4G19150			Ankyrin repeat family protein ...		Lus10001414 [exp]	45.2	0.6621
AT3G52440	DOF	AtDof3,5	Dof-type zinc finger DNA-bindi...		Lus10029767 [exp]	46.6	0.6631

Compare expression of checked genes

Lus10037933 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.