Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G20510 432 / 9e-146 OPCL1 OPC-8:0 CoA ligase1 (.1.2) AT4G05160 418 / 2e-140 AMP-dependent synthetase and ligase family protein (.1) AT5G38120 411 / 1e-137 4CL8 AMP-dependent synthetase and ligase family protein (.1) AT1G20500 410 / 3e-137 AMP-dependent synthetase and ligase family protein (.1) AT1G20480 409 / 2e-136 AMP-dependent synthetase and ligase family protein (.1) AT5G63380 386 / 6e-128 AMP-dependent synthetase and ligase family protein (.1) AT4G19010 372 / 2e-122 AMP-dependent synthetase and ligase family protein (.1) AT1G62940 322 / 5e-103 ACOS5 acyl-CoA synthetase 5 (.1) AT3G21240 319 / 8e-102 AT4CL2, 4CL2 4-coumarate:CoA ligase 2 (.1) AT1G65060 316 / 1e-100 4CL3 4-coumarate:CoA ligase 3 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038667 [exp] 1030 / 0 AT1G20510 449 / 1e-152 OPC-8:0 CoA ligase1 (.1.2) Lus10015998 [exp] 427 / 9e-144 AT1G20510 833 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10012280 [exp] 431 / 2e-142 AT1G20510 825 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10015999 [exp] 411 / 3e-137 AT1G20510 692 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Lus10021431 [exp] 408 / 1e-136 AT4G05160 803 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10016135 [exp] 405 / 2e-135 AT4G05160 791 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10013831 [exp] 377 / 2e-124 AT4G05160 654 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Lus10036994 [exp] 373 / 1e-122 AT5G63380 516 / 4e-179 AMP-dependent synthetase and ligase family protein (.1) Lus10026544 [exp] 366 / 5e-120 AT4G05160 642 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G230200 [exp] 718 / 0 AT1G20510 478 / 7e-164 OPC-8:0 CoA ligase1 (.1.2) Potri.008G031500 [exp] 714 / 0 AT1G20510 466 / 3e-159 OPC-8:0 CoA ligase1 (.1.2) Potri.002G012800 [exp] 432 / 8e-146 AT1G20510 769 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.005G248500 [exp] 430 / 6e-145 AT1G20510 795 / 0.0 OPC-8:0 CoA ligase1 (.1.2) Potri.004G102000 [exp] 401 / 6e-134 AT4G05160 826 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G112800 [exp] 397 / 2e-132 AT4G05160 852 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G094800 [exp] 383 / 1e-126 AT5G63380 657 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.017G033600 [exp] 380 / 2e-125 AT5G63380 598 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.012G095000 [exp] 378 / 1e-124 AT5G63380 615 / 0.0 AMP-dependent synthetase and ligase family protein (.1) Potri.003G099700 [exp] 377 / 2e-124 AT4G19010 634 / 0.0 AMP-dependent synthetase and ligase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [flax] [poplar] ANL PF00501 [flax] [poplar] AMP-binding AMP-binding enzyme
Representative CDS sequence Show only first row Show all	>Lus10037934 pacid=23163899 polypeptide=Lus10037934 locus=Lus10037934.g ID=Lus10037934.BGIv1.0 annot-version=v1.0 ATGTCACTTGATCAAGAACCATGGAACACCGGCATTCCGGCCACACAACCAAGCAATCCTCAGTCGCAGCTCAGCAACTCCGGCTACGATCCCCACACCG GAATCTACCATTCACTAGTCCACTTTCCCAAAGACGGCCAAATCCCCACCGCCGCCAATTTGGACACAGCAACGTACGTCCTCTCACGATTCCCTCACCC AGAGGTCTCCGAAACCAAAATCGCTCTAATCGATCCCTTCACCGTCCAGCAGCTCACCTACGGCCAACTCCACCGCTCCATCGTAGCCCTTGCTACCGGC CTACGAGATGGCCTTGGAGTCCGAAAAGGAGACGTGGTGCTTCTCCTGTCACCCAACTCCATCCTCTACCCTGCCATCTGTTTAGCCATCATGTCAATCG GAGCAGTTCTCACCCCTGCCAACCCTGTCAACACTAGCTCCGAAATCGTCAAACAGGCCAACGACTCCGGAGCCAAACTCGTCATCTCTGATCCCGAACA GCTCCCCAAGCTGGACTCACTGCTATTCGGAGGAATCATCCCGGTAATGACCACCACTAGGACGTCGAATCTCGGTTACGTCTCCTGCGAAGAATTAATC GAGTGCTGCTCCGACGTCGATCCATCGCCTAGGGTTTCAATTTCTCAATCGGAGACGGCAGCGATCCTCTACTCGTCCGGAACGACTGGAGCCAGCAAGG GAGTTATCCTGACTCATTCCAACTTCATCTCCGTGATGACGATGATGAAATGGTCCGTGGAAGCAATGTCCGCCAACGACGACACATTCCTCTGCTTCAT CCCGATGTTCCACATCTACGGCCTGGCGTTCTTCGCGCTAGGGTTACTAACATTAGGGATAAAAACAGTGTTGATGCCCAAATTCGACCTGAAATCGATG TTGCAATTGATCGAGACGCACCGCGTCAACAACTTACCTGCCGTCCCGCCGGTGATTCTCGGGATGGTGAAGTTAGCGGACCAATTAGGGTTCGATTTGA GCTCCCTGCGGCGAGTCGGGAGTGGGGCGGCACCGTTGAGCGGAGAAATGGTGAAGGAGTTTCGGAGGAGGTTCCCATGGGTGGAACTGCGGCCAGGATA CGGGTTGACGGAGAGCTGCGGAGCAACGACGATGTTTGCGGGGGGTGAGGAGGCGAAGCGAAAGCCGGAGGGGTGTGGAAAGTTATTGCCGTGTTTCGAG GCGAAGGTTGTGGATGCAGAAACAGGGGAAGCTATGGCGCCGTACGGACGTGGGGAGCTGTGGGTGAAGAGCCCGACGGTGATGAAGGGGTACCTGAGGA ATGAGGAGGCGACGGCGGAAGCGGTTGATAAGGAAGGGTGGTTGAGGACTGGGGATCAGTGTTATTTCGACGGAGAAGGGGTTTTGTATGTTGTTGATCG GATCAAGGAGCTGATCAAGCATAATGGGTATCAGGTGGCCCCGGCGGAACTGGAAGCGATACTGTTGAAACATCCTCAAGTAATGGACGCTGCAGTGATA CCAGTTAAAGATGCGGCGTCGGGAGAAATACCAATGGCCTATGTTGTCGGAGCTTCGAGCGGTGGAGCAGGACTCACTGAAGAACAACTCATCGAGTTTG TCGCCGGTCAGGTTGCTCCATACAAGAAAGTGAGGAGGGTTGCTTTCGTCGACGTGATTCCGAAGTCGGCAGCTGGCAAGATTTTGAGGAAGCAACTCAT TTCGCTCAACCAACAACAGATTACATCAAAGCTCTGA
AA sequence Show only first row Show all	>Lus10037934 pacid=23163899 polypeptide=Lus10037934 locus=Lus10037934.g ID=Lus10037934.BGIv1.0 annot-version=v1.0 MSLDQEPWNTGIPATQPSNPQSQLSNSGYDPHTGIYHSLVHFPKDGQIPTAANLDTATYVLSRFPHPEVSETKIALIDPFTVQQLTYGQLHRSIVALATG LRDGLGVRKGDVVLLLSPNSILYPAICLAIMSIGAVLTPANPVNTSSEIVKQANDSGAKLVISDPEQLPKLDSLLFGGIIPVMTTTRTSNLGYVSCEELI ECCSDVDPSPRVSISQSETAAILYSSGTTGASKGVILTHSNFISVMTMMKWSVEAMSANDDTFLCFIPMFHIYGLAFFALGLLTLGIKTVLMPKFDLKSM LQLIETHRVNNLPAVPPVILGMVKLADQLGFDLSSLRRVGSGAAPLSGEMVKEFRRRFPWVELRPGYGLTESCGATTMFAGGEEAKRKPEGCGKLLPCFE AKVVDAETGEAMAPYGRGELWVKSPTVMKGYLRNEEATAEAVDKEGWLRTGDQCYFDGEGVLYVVDRIKELIKHNGYQVAPAELEAILLKHPQVMDAAVI PVKDAASGEIPMAYVVGASSGGAGLTEEQLIEFVAGQVAPYKKVRRVAFVDVIPKSAAGKILRKQLISLNQQQITSKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G20510		OPCL1	OPC-8:0 CoA ligase1 (.1.2)		Lus10037934 [exp]	0	1
AT5G24600			Protein of unknown function, D...		Lus10015590 [exp]	4.0	0.8625
					Lus10004778 [exp]	4.1	0.9123
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024889 [exp]	4.2	0.8717
AT1G18140		LAC1, ATLAC1	laccase 1 (.1)		Lus10009827 [exp]	4.5	0.8510
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	5.3	0.8843
AT2G37640		ATHEXPALPHA1.9,...	ARABIDOPSIS THALIANA EXPANSIN ...		Lus10002638 [exp]	5.5	0.9014
AT2G34930			disease resistance family prot...		Lus10001035 [exp]	6.5	0.8994
AT1G79400		ATCHX2	cation/H+ exchanger 2, cation/...		Lus10026156 [exp]	6.5	0.8872
AT5G44120		ATCRA1, CRU1, C...	CRUCIFERINA, RmlC-like cupins ...		Lus10024891 [exp]	6.7	0.8876
					Lus10038255 [exp]	7.7	0.8678

Compare expression of checked genes

Lus10037934 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.