Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G58330 709 / 0 lactate/malate dehydrogenase family protein (.1.2.3) AT1G04410 229 / 3e-70 c-NAD-MDH1 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) AT5G56720 229 / 3e-70 c-NAD-MDH3 cytosolic-NAD-dependent malate dehydrogenase 3, Lactate/malate dehydrogenase family protein (.1) AT5G43330 228 / 1e-69 c-NAD-MDH2 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038668 [exp] 800 / 0 AT5G58330 707 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Lus10021870 [exp] 241 / 1e-74 AT5G43330 606 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10011819 [exp] 228 / 8e-70 AT5G43330 613 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10041144 [exp] 233 / 9e-69 AT5G43330 590 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021184 [exp] 106 / 5e-26 AT5G43330 322 / 1e-111 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Lus10021183 [exp] 47 / 2e-06 AT1G04410 123 / 6e-36 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G031700 [exp] 734 / 0 AT5G58330 710 / 0.0 lactate/malate dehydrogenase family protein (.1.2.3) Potri.002G141700 [exp] 243 / 5e-75 AT1G04410 572 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.010G071000 [exp] 232 / 3e-71 AT5G43330 602 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.008G166800 [exp] 229 / 4e-70 AT5G43330 605 / 0.0 cytosolic-NAD-dependent malate dehydrogenase 2, Lactate/malate dehydrogenase family protein (.1) Potri.002G141900 [exp] 216 / 4e-65 AT1G04410 501 / 5e-180 cytosolic-NAD-dependent malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1) Potri.010G230000 [exp] 59 / 6e-10 AT5G58330 51 / 8e-08 lactate/malate dehydrogenase family protein (.1.2.3) Potri.017G152000 [exp] 50 / 2e-06 AT1G53240 277 / 8e-93 mitochondrial malate dehydrogenase 1, Lactate/malate dehydrogenase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0341 [flax] [poplar] LDH_C PF02866 [flax] [poplar] Ldh_1_C lactate/malate dehydrogenase, alpha/beta C-terminal domain CL0063 [flax] [poplar] NADP_Rossmann PF00056 [flax] [poplar] Ldh_1_N lactate/malate dehydrogenase, NAD binding domain
Representative CDS sequence Show only first row Show all	>Lus10037935 pacid=23163875 polypeptide=Lus10037935 locus=Lus10037935.g ID=Lus10037935.BGIv1.0 annot-version=v1.0 ATGGCGTTGGTGGCAGAGCTTACAACATCCCCGTCTGCTGCTGTTTCTGTTCGTACCCACAACAACATTAACTCAAACCGTCTTCACCCTTCCCATTATC TCCACCCACCTTTTTCCTCCTCATGGGTTCTCAGGAAACACCGCTCCTCTCTCCTCCCTTCCATCTCCTGCTCTGTAAATCAGGCTCAGAATTCAGCTCC TGCTCCGCTTCAGGTTGAGAAGCCCAAGGAAAAGCCCGAGTGCTACGGTGTCTTCTGCTTGACTTATGATCTCAAGGCTGAAGAAGAGACTAAATCATGG AAGATGATGATTAATATTGCTGTCTCTGGTGCGGCTGGCATGATATCCAATCATCTCCTCTTTAAACTTGCGTCTGGTGAGGTTTTCGGACCAGATCAAC CAATCGCATTGAGGCTCTTGGGATCTGAAAGGTCGTTCCAAGCTCTTGAAGGAGTGGCAATGGAGCTTGAGGACTCCTTGTTTCCATTGTTGAGGGAGGT AAATATCGGAATAGATCCATATGAGGTGTTCCAGGATGCAGAGTGGGCTCTTTTGATTGGAGCAAAGCCTCGAGGACCTGGCATGGAACGAGCTGACTTG CTTGATATCAACGGCCAGATATTTGCTGAGCAGGGCAAAGCGCTCAATGCTGTTGCCTCTCCCAATGTCAAGGTGATGGTTGTTGGCAACCCTTGTAATA CCAATGCTCTGATTTGTATGAAAAATGCTCCAAATATACCGGCAAAGAATTTCCATGCTTTGACTAGGTTGGACGAGAACAGAGCAAAATGTCAGCTTGC TCTGAAAGCAGGCGTTTTCTACGACAAAGTGTCAAATGTGACAATTTGGGGAAACCACTCCACAACTCAGGTTCCAGACTTCTTGAATGCTAGAATCAAC GGAATACCTGTCAAAGAGGTCATCAAAGATCAGAAGTGGCTAGAACAAGAATTCACTGAGAAAGTCCAGAAGAGAGGTGGAGCACTGATTCAGAAGTGGG GGAGATCTTCAGCTGCATCAACGGCTGTGTCGATAGTAGATGCCATAAAATCTCTTGTAACTCCTACTCCTAAGGGCGATTGGTTCTCGTCGGGTGTTTA TACAACTGGGAATCCTTATGGCATAGCAGAAGATATAGTTTTTAGCATGCCCTGCAGATCAAAGGGAGATGGTGATTATGAACTTGTTAAGGAAATACAA ATTGACGACTACCTTCGCAGCCGAATAGCTAAGACTGAGGCTGAGCTGGTAGCTGAAAAGAGATGCGTTGCCCACCTGACGGGAGAGGGTAACGCTTATT GTGATCTACCGGAGGACACGATGCTTCCTGGAGAGATGATCCCTTGCCCCGTACTCCGTCAAATTCTCCTCCACCAGTCGCAAGATCATGTCATCCGGTT CATAAGGGGATTGAATGAGAACTTTGGCGTTATGCCCTCGCAATTACTTCACATGGATCCCCTCCCGGACGTCAATTTGGCGTTCAAATGCGCCGTCCAG TTGGAAAGGCAAATGAAGGGACCGGTGGTTGGCAGTTCAATTGGTTTGATTGCCCTAGCGGCGGGCTTTCAATCCGGAAAGGGGAAGGCAACCAATGAGG CATACTTATTCTGCCAATGCTATGAGCGAAAACCACATAGATTCTGTTCACTTTATTATTTCGGTCATTATTCTCTCGTCAGGATTTCGATTGGTGCAAG GTTAACGGCGATGGAAAGATAA
AA sequence Show only first row Show all	>Lus10037935 pacid=23163875 polypeptide=Lus10037935 locus=Lus10037935.g ID=Lus10037935.BGIv1.0 annot-version=v1.0 MALVAELTTSPSAAVSVRTHNNINSNRLHPSHYLHPPFSSSWVLRKHRSSLLPSISCSVNQAQNSAPAPLQVEKPKEKPECYGVFCLTYDLKAEEETKSW KMMINIAVSGAAGMISNHLLFKLASGEVFGPDQPIALRLLGSERSFQALEGVAMELEDSLFPLLREVNIGIDPYEVFQDAEWALLIGAKPRGPGMERADL LDINGQIFAEQGKALNAVASPNVKVMVVGNPCNTNALICMKNAPNIPAKNFHALTRLDENRAKCQLALKAGVFYDKVSNVTIWGNHSTTQVPDFLNARIN GIPVKEVIKDQKWLEQEFTEKVQKRGGALIQKWGRSSAASTAVSIVDAIKSLVTPTPKGDWFSSGVYTTGNPYGIAEDIVFSMPCRSKGDGDYELVKEIQ IDDYLRSRIAKTEAELVAEKRCVAHLTGEGNAYCDLPEDTMLPGEMIPCPVLRQILLHQSQDHVIRFIRGLNENFGVMPSQLLHMDPLPDVNLAFKCAVQ LERQMKGPVVGSSIGLIALAAGFQSGKGKATNEAYLFCQCYERKPHRFCSLYYFGHYSLVRISIGARLTAMER

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G58330			lactate/malate dehydrogenase f...		Lus10037935 [exp]	0	1
AT5G58330			lactate/malate dehydrogenase f...		Lus10038668 [exp]	1.0	0.9697
AT5G51110			Transcriptional coactivator/pt...		Lus10014182 [exp]	1.4	0.9629
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030873 [exp]	3.5	0.9485
AT1G23740		AOR	alkenal/one oxidoreductase, Ox...		Lus10030615 [exp]	4.2	0.9406
AT2G20890		PSB29, THF1	THYLAKOID FORMATION1, photosys...		Lus10039748 [exp]	4.9	0.9437
AT5G51110			Transcriptional coactivator/pt...		Lus10022731 [exp]	5.0	0.9419
AT2G30860		GLUTTR, ATGSTF7...	glutathione S-transferase PHI ...		Lus10004151 [exp]	5.1	0.9182
AT5G21222			protein kinase family protein ...		Lus10034924 [exp]	6.0	0.9225
AT4G01050		TROL	thylakoid rhodanese-like (.1)		Lus10005947 [exp]	6.3	0.9281
AT1G26480		GF14IOTA, GRF12	general regulatory factor 12 (...		Lus10036471 [exp]	6.7	0.9152

Compare expression of checked genes

Lus10037935 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.