Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G49530 269 / 9e-81 SIN-like family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041724 [exp] 689 / 0 AT5G49530 268 / 1e-81 SIN-like family protein (.1) Lus10024027 [exp] 231 / 2e-71 AT5G49530 78 / 2e-16 SIN-like family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G028600 [exp] 414 / 3e-136 AT5G49530 503 / 2e-170 SIN-like family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0662 [flax] [poplar] Triple_barrel PF04801 [flax] [poplar] Sin_N Sin-like protein conserved region
Representative CDS sequence Show only first row Show all	>Lus10037936 pacid=23163753 polypeptide=Lus10037936 locus=Lus10037936.g ID=Lus10037936.BGIv1.0 annot-version=v1.0 ATGGATTTGGATGACTTCGACGAACAGGATGCGCCCAAGCAGGCTCCTGTAAAAGCTCCCAAGTTCACGCCTAAAGACTCCAGGTTCAAACCACAACCAA AGGGGAAAAAACCTGCACGGCAGGAGGTCTCTGTCACCAAACCAGAGCCGCAAGAACCAATTGCATCGGTCTCTGTCACCAAGCCAGAGCTTCAAGAACC AATTGCATCGGTATTGAGTAAGGAAGAGGATGAAGACGTGAAACCTAAATTGGCTGTGGAGGCTAAGGCGCCAGTGGAGTCAAGTATCTCCAATTCTGCC AGACCGAATATGGAAGTTGATGCAACAAGGGATGCGGGAGATGAGGATGATCGCATGGATATTGACAAAGGAGAAGAAGTTGTAGGAGAAGAGGATGTGA TTGTTCGCGAGATTGAAGTCTTCTTCACTCCTTCGGTTGATCCTGAGACTCAGGTATATGTTTTGCAATATCCTCTGAGACCTCGGTGGAGACCATATGA ACTTGATGAATGTTGTGAGGAGGTTAGACTGAAACCTTCAACTGATGAAGTGGAGGTTGATTTATCCATTGACAATTCGATGAATTTTGATGCAAGTTAT GCAGGCAGGTTAGCGATGAAAAAGCGGACTTTGTCATCTGTGTGGACACCTCCCAGTGCACGTGCCGGCTATGCTGTTGGAGCTCTCATTGGTAATAAGT TGCATTTGAATCCTGTCAAGGCAGTGGTGCAACTTCGACCTTCTTTGAAACACTATGAATCATTTGATTCAGACCTGAAAATCAATACCGAAAGTGATAC AGATGTCACTATCAAACAAGAAGGTTCTAGTCAGGCGAAACGCGCTAGTTCGTCAAAAAAGCAGCAGACAGGTACTGTAAGTGGACAAGCTTCGAATGCT GAAGGGTCTTGGGTCCCACTAAAGTACCATAGCCCGAAGAGTGACATCTCTTCTGCGTATCTCGAGAAAATGGTCACACAAGATCTTTCTCCTATAGAGT TTACAATGAGCCCGTATGAGTATATGAGTTCAATGTGTCCTGGAGCATCCAACAGCAGCGATAAGTGTAAAGGTCCATCAAGAAGGCTTCTGCTTTCATT GCCGTTGAAAAAGCGCATAGAGAAATTGTTTCTCGAGGGACCCCCAGTTCAGAGGTTTGTTGCCATCAAGCATTTTGCTCCTGACAGCTCGGATGAGGAG CTCTTAGAAGTCCTTGGAGAGTATGGGCAATTAGTGCAGGGACTTTGGGCTGCAAAAACTTCTTTGCTGATCCCTCCAAGTGATAAACAGAAACTCGTGG CTAGAGATTATGTTCTTCTGTTATTTAGCGAAAGTATAGAGATCCCCTCTTCAGAACCAAAAAGCCTTCCGAGGATTGAAACCCATATGAAAGACTTTCT GAAGATATTTGCTGTTGAACGACCTTCGTTGCGGGATTGGAAGTTTAAGGAGCAAACAGACTGGTCTTTTATGAAAAAGTACCCACATGTTGTTGAAAAG TCCAAGAAAACTTATGAAAGCGTGCATAAAAGTCTCAAGGATCTGCTCGAAAAAATGCGCAAGGTGGGGCCTGGCGGTAGGAACTTAGCAAAGCCAAATG TGCCGAGGAACCCTGCAAAACTTCTAGGTTCTGATAAAACCGCAACAGCTTCAGGAAGTACAAAGAGCACCATAACACATGAAACTCGAGAAGGTCTGAA GAAGTTCCTACTGAAGATTATCCACACTCACAAAGTTTGCAGGAAAATCGTCATTAAACTTCTCATAGGTAAGGGTCCTGATGCAAAGCTAAAGAGGGCT GAAATCAAAGAAGCAGTTCTCTTTGAGCTGGAAAGAGAAATGACCAACCCCGAACACAAGGTAGTTGCAGATATTTGCGAATCAAAAGCTTCAGCCTGGG TGTTGAAAAGTGGAGATGGGAAGCCAACATGA
AA sequence Show only first row Show all	>Lus10037936 pacid=23163753 polypeptide=Lus10037936 locus=Lus10037936.g ID=Lus10037936.BGIv1.0 annot-version=v1.0 MDLDDFDEQDAPKQAPVKAPKFTPKDSRFKPQPKGKKPARQEVSVTKPEPQEPIASVSVTKPELQEPIASVLSKEEDEDVKPKLAVEAKAPVESSISNSA RPNMEVDATRDAGDEDDRMDIDKGEEVVGEEDVIVREIEVFFTPSVDPETQVYVLQYPLRPRWRPYELDECCEEVRLKPSTDEVEVDLSIDNSMNFDASY AGRLAMKKRTLSSVWTPPSARAGYAVGALIGNKLHLNPVKAVVQLRPSLKHYESFDSDLKINTESDTDVTIKQEGSSQAKRASSSKKQQTGTVSGQASNA EGSWVPLKYHSPKSDISSAYLEKMVTQDLSPIEFTMSPYEYMSSMCPGASNSSDKCKGPSRRLLLSLPLKKRIEKLFLEGPPVQRFVAIKHFAPDSSDEE LLEVLGEYGQLVQGLWAAKTSLLIPPSDKQKLVARDYVLLLFSESIEIPSSEPKSLPRIETHMKDFLKIFAVERPSLRDWKFKEQTDWSFMKKYPHVVEK SKKTYESVHKSLKDLLEKMRKVGPGGRNLAKPNVPRNPAKLLGSDKTATASGSTKSTITHETREGLKKFLLKIIHTHKVCRKIVIKLLIGKGPDAKLKRA EIKEAVLFELEREMTNPEHKVVADICESKASAWVLKSGDGKPT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	0	1
AT5G20490		XI-17, ATXIK, X...	MYOSIN XI-17, MYOSIN XI K, Myo...		Lus10003315 [exp]	1.0	0.9436
AT1G58230			binding (.1)		Lus10042866 [exp]	1.4	0.9410
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	2.4	0.9347
AT5G15400			U-box domain-containing protei...		Lus10030697 [exp]	2.6	0.9100
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	2.8	0.9222
AT5G05570			transducin family protein / WD...		Lus10037841 [exp]	4.2	0.9157
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	5.0	0.9164
AT5G23490			unknown protein		Lus10019229 [exp]	6.0	0.8877
AT5G22450			unknown protein		Lus10004878 [exp]	6.5	0.8985
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	6.9	0.9065

Compare expression of checked genes

Lus10037936 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.