Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G18540 367 / 4e-116 RmlC-like cupins superfamily protein (.1) AT4G36700 348 / 5e-111 RmlC-like cupins superfamily protein (.1) AT2G28490 177 / 1e-47 RmlC-like cupins superfamily protein (.1) AT3G22640 71 / 1e-12 PAP85 cupin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10041722 [exp] 785 / 0 AT2G18540 401 / 2e-132 RmlC-like cupins superfamily protein (.1) Lus10006420 [exp] 172 / 2e-46 AT2G28490 471 / 2e-163 RmlC-like cupins superfamily protein (.1) Lus10011364 [exp] 172 / 2e-46 AT2G28490 466 / 2e-161 RmlC-like cupins superfamily protein (.1) Lus10042615 [exp] 96 / 3e-20 AT3G22640 201 / 3e-58 cupin family protein (.1) Lus10022070 [exp] 81 / 2e-15 AT3G22640 205 / 8e-60 cupin family protein (.1) Lus10042617 [exp] 78 / 1e-14 AT3G22640 202 / 2e-58 cupin family protein (.1) Lus10022072 [exp] 46 / 4e-05 AT3G22640 114 / 4e-29 cupin family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.007G029100 [exp] 494 / 1e-165 AT2G18540 391 / 2e-126 RmlC-like cupins superfamily protein (.1) Potri.009G054700 [exp] 185 / 9e-51 AT2G28490 522 / 0.0 RmlC-like cupins superfamily protein (.1) Potri.006G002500 [exp] 72 / 6e-13 AT3G22640 174 / 7e-49 cupin family protein (.1) Potri.005G212333 [exp] 48 / 1e-05 AT3G22640 76 / 2e-15 cupin family protein (.1) Potri.005G224400 [exp] 45 / 0.0002 AT5G44120 280 / 4e-89 CRUCIFERINA, RmlC-like cupins superfamily protein (.1.2.3) Potri.001G259208 [exp] 0 / 1 AT2G28490 0 / 1 RmlC-like cupins superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10037937 pacid=23163676 polypeptide=Lus10037937 locus=Lus10037937.g ID=Lus10037937.BGIv1.0 annot-version=v1.0 ATGGTGAAGGAATCGGTATGGATTACGGTCATGGTTTCATCGTTCTTACTGCTACTGCTCTACTCTGCTACGGCGGCGGCGGCAGCCATTGGCGATGAAG AGAAAGTCCCAGCAGTGGTGAGGAGAGATGAGAGGAAGCAGGTAATGGTGACAGAGTACGGAAAGATCTCGTCGGTTGACGTCATCACCGCAACGAGAGG TCCCTTCCACGTGGAGTTCATCACATTGAACCCTAACTCCTTGTTCCTCCCTGTTCTCCTCCACTCCGACATGGTCTTTTACGTCCACACAGGAAGCGGG AAGTTGAGTTGGGGAGATGGCGATGAAATCAAGAGAGTGGATTTGCGGAGAGGAGATGTCTACAGGTTGGAGGCTGGCTCTGTTTTCTTCCTGCAGAGTA ATTTGGATGCTCTCCGCCAGAATCTTAGGGTTCATGCCATCTTCACCACTACAGATGAAGACATTTGGGAGCCGTCAATTGGAGCATACTCCAGCATTTC GGATCTCGTCCTGGGGTTCGACAACAAGCTTCTCCAATCCGCCTTCTCGGTTTCTGAAGAGATGATCGAGGAAATAACCAGCGCACCGAAACCGCAAGGG ATTGTTCACGTCGCAACTCCTCCACAGTCGGAGGATAAGAAGAAGAGAAGTGTATTCTATGAATTGGAGAATCGTTTTCTCAAGGTGCTCGCTACTGGAG AAGGTGGGGGGTCCTTCGATGTCAAAAACAAGAAGAAATCGCAGACGTTCAATGTTTTCGAGTCCGACCCTGATTTCCAGAACTGCAATGGCTGGAGCCT TACTGTTGATAAAGGCAACTTTAAGACCCTCAAAGGTTCCCACATTAGCGTCTTCATGGTCAACTTGACCAAGGGAGCAATGATGGGGCCTCATTGGAAC CCGATGGCCACGGAAGTAGGAGTGGTCCTCGAAGGGGAAGGAATGGTGCGAGTGGTTTGCTCATCGAACTCGACAGGGCGGTGCAAGAACAAGAGGTTTA TGGTGGGTCCAGGGGACGTGTTTGTGGTGCCGAGGTTTCATCCGATGGCGCAAATGTCATTCAACAACGCTTCATTCGTGTTCATGGGGTTCAGCACCTC GGCAAAGAAGAACCACCCGCAGTTCCTGGCCGGGAAGAGGTCGGTTCTCCGGACGTTGGACAAGGACGTGTTGGCTCTGTCTTTCAATGCGAGCAACACC ACGATCGACCATTTGTTGGGCGCTCAGGGTGAAGCGATTATATTGGAGTGTGTTTCTTGTGCGGAGGCGGAGTTGGAGTTGATGAAGAAAGAGATTGAGA GGGAGAGGAAGGAGGAAGAAGAGAGGAAGAGGAAAGAGGAGGAAGAAGAGAGGAAGAGGAAAGAGGAGGAAGAGAGAAGGGAAGAAGAGGAAGAGAGGAG GAGGAAGGAAGAGGAAGAAGAAAGGGAGAGGAAAGAAGAGGAAGCGAGGAGAGAGCAAGAAGAGGCTAGAAAGGAGGAGGAAGAGAGGAAGAGGGAGGAA GACGAGGAAATGAAGAGAAGGGAAGAAGAAGAGAGGGAGAGGAAAGAGGAGGCGGCAAAGAGGGAGCAAGAAGAAGCTAGAAAGGAGGAGGAAGAAAGTC GGAGGAAGAGGGAGGAGGAGGAAGAAATGAAGAGAAAGGAGGAAGAGGAAATGGAGAAGAAAGAAGAGGCGGCGGCGAGGGAACAAGAAAAGGCTCGACA GGAAGAGGAAGAGAGACGGAAGAAGAGGGAGGAGGAAGAGGAAATGAAGAGAAAGGAAGAAGAAGAAATGGAGAAGAAGGAAGAGAGGGCGGAGACGGAG CAAGAAGAGGCTAGAAAGGAGGAGGAAGAGAGACGGAGGAAGAGGGAGGAGGAAGAGGAAATGAAGAGAAAGGAAGAAGAAGAAATGGAGAAGAAGGAAG AGAGGGCGGAGACGGAGCAAGAAGAGGCTAGAAAGGAGGAGGAAGAGAGGCAGAGGAAGAGGGAGGAAGAAGAAAAAATAGAGAAAAAAGAGGAGGAAGA GAGGCAGAGGAAGAGGGAGGAAGAAGAAGAAATAGAGAAGAAAGAGGAGGCAAGTAGGGAGCAAGAAGAAGCTAGAGAGGCAGAGGAAGAGAGACAGAGG AAGAGGGAAGCAGAGGGCGAAGAGGAAAGTCGAAGAAGAGAAGAGGCTAGGGAGGCAGAGGAGGAAACACGGCAGAAACGAGAAGAGGCAGCGATAAGGG AGCAAGAAGAAGCAAGGCGTCAGGAAGAGAGGAGGGAGAGGGAAGAGCCATCCGAAGGTGGTGGTGGTGGTGAAGCAAGAGGGACATTTAGAAGTCCTTG GAGACTTTGGATGTGA
AA sequence Show only first row Show all	>Lus10037937 pacid=23163676 polypeptide=Lus10037937 locus=Lus10037937.g ID=Lus10037937.BGIv1.0 annot-version=v1.0 MVKESVWITVMVSSFLLLLLYSATAAAAAIGDEEKVPAVVRRDERKQVMVTEYGKISSVDVITATRGPFHVEFITLNPNSLFLPVLLHSDMVFYVHTGSG KLSWGDGDEIKRVDLRRGDVYRLEAGSVFFLQSNLDALRQNLRVHAIFTTTDEDIWEPSIGAYSSISDLVLGFDNKLLQSAFSVSEEMIEEITSAPKPQG IVHVATPPQSEDKKKRSVFYELENRFLKVLATGEGGGSFDVKNKKKSQTFNVFESDPDFQNCNGWSLTVDKGNFKTLKGSHISVFMVNLTKGAMMGPHWN PMATEVGVVLEGEGMVRVVCSSNSTGRCKNKRFMVGPGDVFVVPRFHPMAQMSFNNASFVFMGFSTSAKKNHPQFLAGKRSVLRTLDKDVLALSFNASNT TIDHLLGAQGEAIILECVSCAEAELELMKKEIERERKEEEERKRKEEEEERKRKEEEERREEEEERRRKEEEEERERKEEEARREQEEARKEEEERKREE DEEMKRREEEERERKEEAAKREQEEARKEEEESRRKREEEEEMKRKEEEEMEKKEEAAAREQEKARQEEEERRKKREEEEEMKRKEEEEMEKKEERAETE QEEARKEEEERRRKREEEEEMKRKEEEEMEKKEERAETEQEEARKEEEERQRKREEEEKIEKKEEEERQRKREEEEEIEKKEEASREQEEAREAEEERQR KREAEGEEESRRREEAREAEEETRQKREEAAIREQEEARRQEERREREEPSEGGGGGEARGTFRSPWRLWM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G18540			RmlC-like cupins superfamily p...		Lus10037937 [exp]	0	1
AT3G03341			unknown protein		Lus10009121 [exp]	1.7	0.6920
AT2G46150			Late embryogenesis abundant (L...		Lus10027178 [exp]	6.6	0.6991
AT1G67810		SUFE2	sulfur E2 (.1)		Lus10011408 [exp]	10.1	0.7653
AT1G73830	bHLH	bHLH050, BEE3	BR enhanced expression 3 (.1.2...		Lus10009034 [exp]	14.3	0.6682
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Lus10017677 [exp]	21.1	0.6856
AT4G16563			Eukaryotic aspartyl protease f...		Lus10007466 [exp]	30.5	0.6822
AT1G17810		BETA-TIP	beta-tonoplast intrinsic prote...		Lus10040652 [exp]	31.0	0.6745
					Lus10039965 [exp]	33.8	0.6711
AT3G22560			Acyl-CoA N-acyltransferases (N...		Lus10039343 [exp]	35.7	0.6659
AT1G52690		LEA7	LATE EMBRYOGENESIS ABUNDANT 7,...		Lus10007956 [exp]	45.9	0.6762

Compare expression of checked genes

Lus10037937 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.