Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G55620 474 / 3e-172 eIF6A, EMB1624 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) AT2G39820 359 / 1e-126 eIF6B eukaryotic initiation factor 6B, Translation initiation factor IF6 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038669 [exp] 355 / 6e-126 AT3G55620 334 / 3e-118 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229800 [exp] 473 / 5e-172 AT3G55620 472 / 2e-171 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) Potri.007G064800 [exp] 455 / 7e-165 AT3G55620 454 / 2e-164 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1) Potri.005G098700 [exp] 310 / 2e-108 AT3G55620 311 / 5e-109 embryo defective 1624, eukaryotic initiation facor 6A, Translation initiation factor IF6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0197 [flax] [poplar] GME PF01912 [flax] [poplar] eIF-6 eIF-6 family
Representative CDS sequence Show only first row Show all	>Lus10037938 pacid=23163904 polypeptide=Lus10037938 locus=Lus10037938.g ID=Lus10037938.BGIv1.0 annot-version=v1.0 ATGGCGACTAGACTTCAATTTGAGAATAACTGTGAAGTTGGCGTTTTCTCTAAGCTGACTAATGCATACTGCCTAGTCGCAGTCGGAGGGTCTGAAAGTT TCTACAGCATTTTCGAATCAGAGTTGGCAGATGTCATCCCCGTTGTTAAGACCTCTATTGGAGGCACTAGAATTATTGGACGGCTATGCGCTGGAAACAA AAACGGGCTTCTTGTTCCACACACCACCACTGATCAGGAGCTTCAGCACTTGAGAAACAGTCTCCCTGATTCAGTGGTTGTCCAGAGGATAGAGGAGAGA TTGTCAGCACTCGGTAACTGTATCGTTTGTAATGACCATGTTGCTCTTGCACATACTGATCTCGACCGGGAAACTGAAGAGATGATTGCTGATGTCCTTG GAGTTGAAGTGTTCAGACAGACGATTGCTGGGAATATTCTTGTTGGAAGCTATTGTGCCTTGTCTAATAGAGGTGGCTTGGTCCACCCGCACACTTCAAT GGAAGACATGGACGAGCTTTCCACTCTTCTCCAAGTCCCTTTGGTTGCAGGGACTGTTAACCGTGGCAGTGACGTTATAGCAGCAGGGATGACTGTAAAT GACTGGACAGCATTCTGTGGTTCGGACACTACAGCAACAGAACTATCTGTTATTGAGAGTGTATTCAAGTTGAGGGAAGCTCAACCAAGTGCCATCATGG ACGAGATGAGGAAGTCTCTGGTTGACACTTACGTCTGA
AA sequence Show only first row Show all	>Lus10037938 pacid=23163904 polypeptide=Lus10037938 locus=Lus10037938.g ID=Lus10037938.BGIv1.0 annot-version=v1.0 MATRLQFENNCEVGVFSKLTNAYCLVAVGGSESFYSIFESELADVIPVVKTSIGGTRIIGRLCAGNKNGLLVPHTTTDQELQHLRNSLPDSVVVQRIEER LSALGNCIVCNDHVALAHTDLDRETEEMIADVLGVEVFRQTIAGNILVGSYCALSNRGGLVHPHTSMEDMDELSTLLQVPLVAGTVNRGSDVIAAGMTVN DWTAFCGSDTTATELSVIESVFKLREAQPSAIMDEMRKSLVDTYV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G55620		eIF6A, EMB1624	embryo defective 1624, eukaryo...		Lus10037938 [exp]	0	1
AT3G46560		TIM9, EMB2474	embryo defective 2474, Tim10/D...		Lus10038695 [exp]	1.7	0.9333
AT5G08630			DDT domain-containing protein ...		Lus10004282 [exp]	2.8	0.9179
AT2G46230			PIN domain-like family protein...		Lus10012649 [exp]	3.2	0.9157
AT4G22000			unknown protein		Lus10008487 [exp]	3.5	0.9273
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10039931 [exp]	3.7	0.9116
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011957 [exp]	4.1	0.9002
AT4G24940		ATSAE1A, AT-SAE...	SUMO-activating enzyme 1A (.1)		Lus10028846 [exp]	7.3	0.9142
AT4G33250		ATTIF3K1, EIF3K	eukaryotic translation initiat...		Lus10027668 [exp]	7.3	0.9217
AT5G27650			Tudor/PWWP/MBT superfamily pro...		Lus10032634 [exp]	8.0	0.9110
AT4G32175			PNAS-3 related (.1)		Lus10042121 [exp]	8.8	0.8906

Compare expression of checked genes

Lus10037938 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.