Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10480 398 / 1e-136 NAC ANAC050 NAC domain containing protein 50 (.1.2.3) AT3G10490 396 / 7e-136 NAC ANAC051, ANAC052 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) AT5G04410 274 / 1e-86 NAC NAC2, ANAC078 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) AT3G10500 254 / 4e-79 NAC ANAC053 NAC domain containing protein 53 (.1) AT3G17730 206 / 2e-64 NAC ANAC057 NAC domain containing protein 57 (.1) AT5G04400 207 / 5e-63 NAC ANAC077 NAC domain containing protein 77 (.1) AT5G64060 198 / 6e-60 NAC ANAC103 NAC domain containing protein 103 (.1) AT5G09330 201 / 1e-59 NAC VNI1, ANAC082 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) AT1G34180 202 / 2e-59 NAC ANAC016 NAC domain containing protein 16 (.1.2) AT1G65910 202 / 9e-59 NAC ANAC028 NAC domain containing protein 28 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038670 [exp] 640 / 0 AT3G10490 441 / 5e-143 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10023537 [exp] 462 / 4e-162 AT3G10490 331 / 2e-110 Arabidopsis NAC domain containing protein 51, NAC domain containing protein 52 (.1.2) Lus10040422 [exp] 369 / 8e-126 AT3G10480 263 / 6e-84 NAC domain containing protein 50 (.1.2.3) Lus10028824 [exp] 248 / 7e-77 AT5G04410 378 / 5e-125 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10017458 [exp] 226 / 2e-68 AT5G04410 379 / 8e-126 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Lus10042284 [exp] 203 / 3e-62 AT3G17730 348 / 1e-121 NAC domain containing protein 57 (.1) Lus10026373 [exp] 202 / 4e-62 AT3G17730 348 / 2e-121 NAC domain containing protein 57 (.1) Lus10028713 [exp] 206 / 8e-61 AT1G34190 392 / 2e-130 NAC domain containing protein 17 (.1) Lus10020896 [exp] 194 / 8e-58 AT5G09330 276 / 2e-88 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229700 [exp] 493 / 6e-174 AT3G10480 418 / 8e-144 NAC domain containing protein 50 (.1.2.3) Potri.008G031800 [exp] 290 / 6e-93 AT5G04410 511 / 6e-177 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.010G229900 [exp] 272 / 5e-86 AT5G04410 481 / 4e-165 Arabidopsis NAC domain containing protein 78, NAC domain containing protein 2 (.1) Potri.015G030200 [exp] 209 / 1e-65 AT3G17730 374 / 6e-133 NAC domain containing protein 57 (.1) Potri.008G081500 [exp] 205 / 9e-63 AT1G54330 316 / 1e-107 NAC domain containing protein 20 (.1) Potri.010G174600 [exp] 204 / 2e-62 AT1G54330 290 / 2e-97 NAC domain containing protein 20 (.1) Potri.005G058900 [exp] 203 / 2e-61 AT5G64060 256 / 3e-82 NAC domain containing protein 103 (.1) Potri.002G061300 [exp] 208 / 3e-61 AT1G34190 432 / 3e-145 NAC domain containing protein 17 (.1) Potri.007G109100 [exp] 204 / 3e-61 AT5G09330 265 / 6e-84 VND-interacting 1, NAC domain containing protein 82 (.1.2.3.4) Potri.012G038100 [exp] 196 / 6e-60 AT3G17730 339 / 4e-118 NAC domain containing protein 57 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02365 [flax] [poplar] NAM No apical meristem (NAM) protein
Representative CDS sequence Show only first row Show all	>Lus10037939 pacid=23163746 polypeptide=Lus10037939 locus=Lus10037939.g ID=Lus10037939.BGIv1.0 annot-version=v1.0 ATGCCTCGGGAAACGTGCGCCCCTCTACCGTTGGTTCCGGCGTCGCCCCTCCAGTCGCAACCGCCGGCTGTTGGTGCTTCTGCTGGCGGCGTTTTGGCTC CTGGGTTCCGATTTCACCCGACAGATGAGGAGCTCGTTATCTATTACTTGAAGCGGAAAGTTGGGAACAAGCCCGTCCGCTTCAACGCCATAGCTGAAGT CGATATCTACAAGAATGAACCTTGGGACCTTGCCGACAAGTCAAGATTGAAAAGCAGAGACCAAGAGTGGTACTTTTTCAGTGCATTGGACAAGAAATAT GGCAATGGAGCTAGAATGAACAGAGCCACCGGCAAAGGTTACTGGAAAGCCACCGGGAAAGACCGGGAAATTCGTCGAGACAACCAGCTTTTAGCTATGA AGAAGACCCTTGTGTTTCATAGTGGACGCGCCCCTGGTGGCCAACGCACTAACTGGGTTATGCATGAGTACCGTCTAGTTGACGAGGAATTGGAAAGAAT GGGCACTTTGCAGGGTGATTCGTATGTTCTGTGTAGAGTGTTTCACAAGAATAATATAGGACCACCAAATGGAAACCGCTATGCTCCTTTCTTGGAGGAA GAGTGGGATGACAGTCGAGCAGTTCTTGTCCCTGGAGAAGATGTTGCAGATGAAGTTGTTGCTTGCAATGAGATGAATAACATGGAGCAGAATGAAAGTG TGGAGATGGAGGGTGATGCTCCTATGTGCGTCCTCAACACCGAAGCTCCTTTCCCACTAATCCAATACAAAAGAAGAAAGCATGGCCATGATTACGATTC CAATGGTTCAGAAAAGTCAAGAACTACTCAGGACCTTTGCTCATCCACCACAACGACAGCTACTACCACCACTAACACAACAGATATGATGATGACGACA ACTGCAGCTACCAATACTGCTATATCCGCACTTTTAGAGTTCTCCCTTATGGAGCCTAAAGAGCGGACTCCTGCTCCACCTCCTTCCCCGAAAGAACCTC CATTTCCGCCTGCTAGCCTCGAGTCTTTGGTCCCTTCTGGGTGCATGAAGTTGATCAACGACCTGCAGCGCGAGGTCCACAAAGTCTCAGTTGAGAGGGA GACGCTGAAGATGGAAGTGATGAGCGCTCAAGCTATGATCTACATTCTCCAGTCGAGAATCGATGCCCTGAACAAGGAGAATGGGGATCTGAAGAGGAGC CTGAGAGAGGGCTAA
AA sequence Show only first row Show all	>Lus10037939 pacid=23163746 polypeptide=Lus10037939 locus=Lus10037939.g ID=Lus10037939.BGIv1.0 annot-version=v1.0 MPRETCAPLPLVPASPLQSQPPAVGASAGGVLAPGFRFHPTDEELVIYYLKRKVGNKPVRFNAIAEVDIYKNEPWDLADKSRLKSRDQEWYFFSALDKKY GNGARMNRATGKGYWKATGKDREIRRDNQLLAMKKTLVFHSGRAPGGQRTNWVMHEYRLVDEELERMGTLQGDSYVLCRVFHKNNIGPPNGNRYAPFLEE EWDDSRAVLVPGEDVADEVVACNEMNNMEQNESVEMEGDAPMCVLNTEAPFPLIQYKRRKHGHDYDSNGSEKSRTTQDLCSSTTTTATTTTNTTDMMMTT TAATNTAISALLEFSLMEPKERTPAPPPSPKEPPFPPASLESLVPSGCMKLINDLQREVHKVSVERETLKMEVMSAQAMIYILQSRIDALNKENGDLKRS LREG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10490	NAC	ANAC051, ANAC05...	Arabidopsis NAC domain contain...		Lus10037939 [exp]	0	1
AT2G33510		AtCFL1	unknown protein		Lus10002577 [exp]	1.4	0.8737
AT1G16520			unknown protein		Lus10031771 [exp]	4.0	0.8132
AT4G02590	bHLH	bHLH059, UNE12	unfertilized embryo sac 12, ba...		Lus10018761 [exp]	7.4	0.8080
AT1G47840		HXK3	hexokinase 3 (.1)		Lus10002041 [exp]	7.5	0.7952
AT5G24318			O-Glycosyl hydrolases family 1...		Lus10016032 [exp]	8.2	0.8342
AT1G15190			Fasciclin-like arabinogalactan...		Lus10015081 [exp]	11.2	0.8205
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Lus10042626 [exp]	20.0	0.8673
AT2G33510		AtCFL1	unknown protein		Lus10001804 [exp]	23.2	0.8552
AT5G09970		CYP78A7	"cytochrome P450, family 78, s...		Lus10036627 [exp]	24.5	0.6956
AT5G39760	ZF_HD	ATHB23, ZHD10	ZINC FINGER HOMEODOMAIN 10, ho...		Lus10005244 [exp]	24.7	0.7954

Compare expression of checked genes

Lus10037939 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.