Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G03530 239 / 5e-80 ATRABALPHA, AtRABC2a, AtRab18B ,ATRAB ALPHA ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) AT1G43890 228 / 1e-75 ATRAB-C1, RAB18-1, ATRAB18, AtRABC1 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) AT3G09910 207 / 2e-67 AtRab18C, AtRABC2b RAB GTPase homolog C2B (.1.2.3) AT5G59840 157 / 9e-48 Ras-related small GTP-binding family protein (.1) AT3G46060 157 / 1e-47 ARA3, Ara-3, AtRABE1c, AtRab8A RAB GTPase homolog 8A (.1.2.3) AT3G53610 156 / 3e-47 ATRAB8, AtRab8B, AtRABE1a RAB GTPase homolog 8 (.1.2.3) AT1G02130 155 / 3e-47 ARA5, AtRABD2a, AtRab1B, Ara-5 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) AT3G11730 154 / 1e-46 ATFP8, AtRABD1 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG D1, Ras-related small GTP-binding family protein (.1) AT4G17530 153 / 2e-46 RAB1C, AtRab1C, AtRABD2c RAB GTPase homolog 1C (.1) AT5G47200 153 / 3e-46 AtRABD2b, AtRab1A ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038671 [exp] 446 / 5e-161 AT5G03530 241 / 8e-81 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10040423 [exp] 300 / 1e-103 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10022608 [exp] 229 / 7e-76 AT5G03530 347 / 4e-123 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10021507 [exp] 228 / 2e-75 AT5G03530 352 / 5e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10023910 [exp] 228 / 3e-75 AT5G03530 353 / 2e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10014409 [exp] 223 / 2e-73 AT5G03530 351 / 8e-125 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Lus10042775 [exp] 226 / 8e-71 AT1G43900 434 / 4e-150 Protein phosphatase 2C family protein (.1) Lus10029745 [exp] 224 / 2e-69 AT1G43900 422 / 2e-144 Protein phosphatase 2C family protein (.1) Lus10010999 [exp] 158 / 5e-48 AT5G47200 387 / 3e-139 ARABIDOPSIS RAB GTPASE HOMOLOG D2B, RAB GTPase homolog 1A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229600 [exp] 243 / 1e-81 AT5G03530 311 / 7e-109 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.006G121400 [exp] 233 / 3e-77 AT5G03530 335 / 2e-118 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.016G097800 [exp] 231 / 9e-77 AT5G03530 349 / 5e-124 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.007G105500 [exp] 228 / 2e-75 AT1G43890 343 / 1e-121 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.005G063500 [exp] 227 / 3e-75 AT1G43890 346 / 9e-123 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.008G032000 [exp] 225 / 2e-74 AT5G03530 290 / 1e-100 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1) Potri.002G074400 [exp] 221 / 6e-73 AT1G43890 363 / 2e-129 RAB GTPASE HOMOLOG 18-1, ARABIDOPSIS RAB GTPASE HOMOLOG B18, ARABIDOPSIS RAB GTPASE HOMOLOG C1, RAB GTPASE HOMOLOG B18 (.1.2.3) Potri.014G049400 [exp] 159 / 2e-48 AT1G02130 390 / 2e-140 ARABIDOPSIS THALIANA RAB D2A, ARABIDOPSIS THALIANA RESPONSIVE TO ABSCISIC ACID 1B, ARABIDOPSIS RAS 5, RAS 5 (.1) Potri.009G027900 [exp] 159 / 2e-48 AT3G46060 341 / 8e-121 RAB GTPase homolog 8A (.1.2.3) Potri.001G236100 [exp] 157 / 7e-48 AT5G59840 333 / 1e-117 Ras-related small GTP-binding family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00071 [flax] [poplar] Ras Ras family
Representative CDS sequence Show only first row Show all	>Lus10037940 pacid=23163768 polypeptide=Lus10037940 locus=Lus10037940.g ID=Lus10037940.BGIv1.0 annot-version=v1.0 ATGGCATCATCAGCTTCTTCTATGAATTTCTCATCGGCTTCCCCTCCTTCAACTCCGTCTTCTAAAGCCTCCCCTGCCGCTAACGATTACTCCTTCAAGA TTCTCATGATCGGTGATTCCGCCGTCGGCAAAAGCAGTATTCTCCTCAGATTCATTTCCGACTCCAATCACCACCCTTCTCCCACTATTGGTGTGGACTT CAAGATGAAGACCGTTCTGGTCAATGACAAAAGGTTGAAGCTTACTATATGGGATACAGCTGGACAAGAGAGGTTTGGGACATTAACCACATCTTATTAC AGAGGAGCACATGGCATTGTTCTTGTTTATGACGTTACAAATAGAGATACATTCACGAGTTTGTCAGAGATGTGGACTAGAGACGTGGAATTGTATTCTA CCAATGATGAGTGTGTCAAGCTTGTAGTCGGAAACAAACTTGACAAGGAGAGTGAACGTGCTGTAAGCAGGGAAGAAGGTATGGCTCTAGCACAACAGCT TAAATGTTCATTTCTGGAATGTACTGCAAACTCCAGAGAAAGCGTGGAGCAACTCTTTAGAGAACTCATATATAAGAGAAGGGATTGGGAGTCCCGAAAA CACCCACTGTTCGGCCAGATAGACAACCGTTCCAACAACATAACAGAAATGGCTGCTGTTCTTCTTGACTGGAATGCCCTGAAGCACAGGCATGGTAGAC GGAAACATACAGATGACTTGAGTGGGCATTTGACCACTGGAAGGTGCGGTTAA
AA sequence Show only first row Show all	>Lus10037940 pacid=23163768 polypeptide=Lus10037940 locus=Lus10037940.g ID=Lus10037940.BGIv1.0 annot-version=v1.0 MASSASSMNFSSASPPSTPSSKASPAANDYSFKILMIGDSAVGKSSILLRFISDSNHHPSPTIGVDFKMKTVLVNDKRLKLTIWDTAGQERFGTLTTSYY RGAHGIVLVYDVTNRDTFTSLSEMWTRDVELYSTNDECVKLVVGNKLDKESERAVSREEGMALAQQLKCSFLECTANSRESVEQLFRELIYKRRDWESRK HPLFGQIDNRSNNITEMAAVLLDWNALKHRHGRRKHTDDLSGHLTTGRCG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03530		ATRABALPHA, AtR...	ARABIDOPSIS THALIANA RAB GTPAS...		Lus10037940 [exp]	0	1
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10018108 [exp]	75.0	0.7507
AT3G11620		BAS1	alpha/beta-Hydrolases superfam...		Lus10021300 [exp]	97.2	0.7378
AT2G31130			unknown protein		Lus10013926 [exp]	119.4	0.7225
AT1G73390			Endosomal targeting BRO1-like ...		Lus10042289 [exp]	124.1	0.7281
AT1G50670			OTU-like cysteine protease fam...		Lus10040075 [exp]	144.5	0.7324
AT2G43210			Ubiquitin-like superfamily pro...		Lus10025504 [exp]	159.1	0.7227
AT4G32680			unknown protein		Lus10035889 [exp]	189.8	0.6977
AT1G51720			Amino acid dehydrogenase famil...		Lus10037612 [exp]	206.9	0.6993

Compare expression of checked genes

Lus10037940 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.