Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04390 92 / 4e-20 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G03510 82 / 4e-17 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G10470 81 / 2e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT2G28200 78 / 6e-16 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G53600 57 / 2e-09 C2H2ZnF C2H2-type zinc finger family protein (.1) AT5G67450 57 / 4e-09 C2H2ZnF AZF1 zinc-finger protein 1 (.1) AT2G37430 54 / 2e-08 C2H2ZnF ZAT11 C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G59820 52 / 6e-08 C2H2ZnF ZAT12, RHL41 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1) AT2G28710 50 / 4e-07 C2H2ZnF C2H2-type zinc finger family protein (.1) AT3G46070 49 / 8e-07 C2H2ZnF C2H2-type zinc finger family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038674 [exp] 340 / 2e-113 AT2G28200 162 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10023540 [exp] 134 / 8e-36 AT5G04390 179 / 3e-54 C2H2-type zinc finger family protein (.1) Lus10040425 [exp] 118 / 4e-31 AT5G04390 159 / 5e-48 C2H2-type zinc finger family protein (.1) Lus10023912 [exp] 79 / 3e-16 AT5G03510 160 / 1e-47 C2H2-type zinc finger family protein (.1) Lus10021409 [exp] 69 / 5e-13 AT3G10470 157 / 4e-46 C2H2-type zinc finger family protein (.1) Lus10021509 [exp] 68 / 5e-13 AT5G03510 103 / 3e-27 C2H2-type zinc finger family protein (.1) Lus10022610 [exp] 65 / 9e-12 AT2G28200 147 / 1e-43 C2H2-type zinc finger family protein (.1) Lus10030330 [exp] 61 / 3e-10 AT2G37430 125 / 2e-36 C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10024428 [exp] 58 / 1e-09 AT2G37430 157 / 4e-49 C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229400 [exp] 138 / 3e-37 AT5G04390 185 / 3e-56 C2H2-type zinc finger family protein (.1) Potri.008G032300 [exp] 132 / 5e-35 AT5G04390 207 / 1e-64 C2H2-type zinc finger family protein (.1) Potri.016G098100 [exp] 122 / 3e-31 AT2G28200 182 / 6e-56 C2H2-type zinc finger family protein (.1) Potri.009G004800 [exp] 114 / 1e-28 AT2G28200 182 / 7e-56 C2H2-type zinc finger family protein (.1) Potri.004G216900 [exp] 108 / 2e-26 AT2G28200 172 / 4e-52 C2H2-type zinc finger family protein (.1) Potri.006G121600 [exp] 69 / 4e-13 AT5G04390 136 / 4e-38 C2H2-type zinc finger family protein (.1) Potri.008G051200 [exp] 61 / 1e-10 AT2G28710 130 / 8e-39 C2H2-type zinc finger family protein (.1) Potri.010G209400 [exp] 59 / 4e-10 AT2G28710 129 / 2e-38 C2H2-type zinc finger family protein (.1) Potri.001G235800 [exp] 55 / 1e-08 AT2G37430 133 / 2e-39 C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.009G027700 [exp] 53 / 7e-08 AT5G59820 126 / 5e-37 RESPONSIVE TO HIGH LIGHT 41, C2H2-type zinc finger family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037942 pacid=23163834 polypeptide=Lus10037942 locus=Lus10037942.g ID=Lus10037942.BGIv1.0 annot-version=v1.0 ATGGAGGCGGCCGGTGCTACCAAGGAAGCATCTACAGTCGGCGCCCACACCGTCGACACCGTAGACCCAGTTATCCCGACGGCGGCGGCAGAGGTGGAGG TGAAGGCGGAGACAACGGTGATGCATATTCATAAGGAAGAAGAAGTACTCCCCCCGACGCTGCCGTCGTCCGATGATGGCGTTACCGTTCTGAATCCAGT CCCCATTAGCCAGATCATTAAGGGAAAGCGAACCAAGAGGCAACGGGTGCGGTCACCGGTCGCTAGTGACTTCTCCTCCATTGGGGACGATGATGATTAT GTCTACGAGGAGGACGAGGAGATTATCGACGATGATTCCAGGTCATCATATGTACAGCTTCAACCACCGACAAAGGAAGAGGAGGACATGGCCAATTGCT TGATCCTCCTTGCCCAGGGCAATTCCGTCATTTCCAATAATCACATCACCATCATCTCCTCTCCTAATATAACCACCAACAACAATGGGAAATTCACGAG CAGGAGATTCATGGAGGCGGCCACTGGCGGCGGCCTTGACTGCGGTGGCGGAGGAAGAGGAGGTGGAGGGAAGGCGGGTTACTATGTGTATGAATGCAAA ACATGCAGCAGGACATTTCCGTCATTTCAGGCACTCGGAGGACATCGTGCCAGCCACAAGAAGCCCAAGAACATTAACAGCAACAACAACAACTCCTCCT CTATGTTGTCGATGATGATTGGCGGCGGCGACCAGAATAACAAGACATTCAACAACAACAACAACAGCCACATTAACGACAGTATAAGGGACATGAATTC TTGTCTCAACCTCCAACTCAACAGCGGCGGCGGCAGGGTCAACGTCGGCGGCTTTACCAGCTATTACAACAACATTAATAGGACATCGTCAATGTTTAAC AACAATAACAAGGGGATGATGAACAACAACAACAACAGTAGTAAGGTGCACGAGTGCGCAATCTGCGGCGCGGAGTTCAACTCCGGGCAGGCATTGGGAG GCCACATGAGGAGGCACAGGGCTCCTGCTACTTCCGCTGCACCTCCTTCTCCCGCCGCCGCCGGCTTTTCGCTTTTAAATAATAATACTAATAGAAACTC CCAGAGTTTTGTTAACGGTAACGGTTATCATAACCATAACAACGGTAATAATAACCGCAACGGTGGCTACGGCGGAAGCAGCAGCAACAATAATAATAAT CATAATGGGAAAAGAGGAAGGAGTATGTCGTTGGAGTTGGATCTCAACCTGCCAGCACCAGAAGAAAAGCAGCAGCAACCACCGCCGTCGCCGCAGAAGA AGCCGTCACTTGTGTTTGAAAGCCCAGCTTTAGTTGATTGCCATTACTAA
AA sequence Show only first row Show all	>Lus10037942 pacid=23163834 polypeptide=Lus10037942 locus=Lus10037942.g ID=Lus10037942.BGIv1.0 annot-version=v1.0 MEAAGATKEASTVGAHTVDTVDPVIPTAAAEVEVKAETTVMHIHKEEEVLPPTLPSSDDGVTVLNPVPISQIIKGKRTKRQRVRSPVASDFSSIGDDDDY VYEEDEEIIDDDSRSSYVQLQPPTKEEEDMANCLILLAQGNSVISNNHITIISSPNITTNNNGKFTSRRFMEAATGGGLDCGGGGRGGGGKAGYYVYECK TCSRTFPSFQALGGHRASHKKPKNINSNNNNSSSMLSMMIGGGDQNNKTFNNNNNSHINDSIRDMNSCLNLQLNSGGGRVNVGGFTSYYNNINRTSSMFN NNNKGMMNNNNNSSKVHECAICGAEFNSGQALGGHMRRHRAPATSAAPPSPAAAGFSLLNNNTNRNSQSFVNGNGYHNHNNGNNNRNGGYGGSSSNNNNN HNGKRGRSMSLELDLNLPAPEEKQQQPPPSPQKKPSLVFESPALVDCHY

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04390	C2H2ZnF		C2H2-type zinc finger family p...		Lus10037942 [exp]	0	1
AT2G43590			Chitinase family protein (.1)		Lus10032794 [exp]	7.1	0.7942
					Lus10029566 [exp]	15.4	0.7641
AT3G62890			Pentatricopeptide repeat (PPR)...		Lus10033544 [exp]	22.6	0.7660
AT3G06080		TBL10	TRICHOME BIREFRINGENCE-LIKE 10...		Lus10034039 [exp]	26.7	0.6503
AT2G29090		CYP707A2	"cytochrome P450, family 707, ...		Lus10016515 [exp]	29.1	0.7623
AT4G28020			unknown protein		Lus10008905 [exp]	51.2	0.6460
AT1G30840		ATPUP4	purine permease 4 (.1.2)		Lus10008073 [exp]	52.2	0.6759
AT1G52560			HSP20-like chaperones superfam...		Lus10023653 [exp]	53.0	0.7123
AT5G17050		UGT78D2	UDP-glucosyl transferase 78D2 ...		Lus10038247 [exp]	56.0	0.6824
AT4G34850		LAP5	LESS ADHESIVE POLLEN 5, Chalco...		Lus10042388 [exp]	63.9	0.6548

Compare expression of checked genes

Lus10037942 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.