Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04360 406 / 3e-132 ATPU1 ,ATLDA PULLULANASE 1, limit dextrinase (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038675 [exp] 456 / 7e-152 AT5G04360 1200 / 0.0 PULLULANASE 1, limit dextrinase (.1) Lus10000060 [exp] 219 / 2e-70 AT5G04360 143 / 5e-41 PULLULANASE 1, limit dextrinase (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229300 [exp] 426 / 4e-140 AT5G04360 1399 / 0.0 PULLULANASE 1, limit dextrinase (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0369 [flax] [poplar] GHD PF11852 [flax] [poplar] DUF3372 Domain of unknown function (DUF3372)
Representative CDS sequence Show only first row Show all	>Lus10037943 pacid=23163813 polypeptide=Lus10037943 locus=Lus10037943.g ID=Lus10037943.BGIv1.0 annot-version=v1.0 ATGGCTCTCCCGCTTTCCTTCCCGCCATTAATTTCCACCCTCTCTCCATCATCAACAAGAACAGCTCCGCTTCTTCGACTTTCGAATAGCTCTTCTCATC ATCGCCCATTGCACTCTGCTCACAGCTCAATTCACTTACCCTTCCCCGGCTTTTCGACTGCTTCGCGATACCCACTTCTCCGTTGTTCGTCTTCCATGCC TGCCGAGGTCTCCACCGCCCCTTCTCAGTTGGAGAATTGCTTCTTGTACTCCAAGGCTTTTTGGGTTAGCGAATCCGTGATCGCCTGGAATGTAGACGTC AGAGATGGGCGTTGCTGTTTGTATGCTAGCTGGACTGCTTCTTTGTCTGCTACGGATGATGGAATTCAAGGCTATGATGCGAGGATTGAGATAGTTGAAG ACAGTGGCGGCCTCCCTGCGAATGTGGTTGAAAAGTTTCCTCCTATTCGAGATTACAAGGCTTTCAGAGTTCCTGCTGGCGTGGATGTAAAATCTTTACT CAAAAGCCAGTTGGCTGTTGCCGCCTTTAGCTCTGATGGAAAATGCAGCGATGCCACTGGGTTGCAGTTGCCCGGTATCTTAGATGAGCAGTTTTCATAT GATGGCCCTCTCGGTGCATGCTACTCAGAAGATGCTGTCTCACTCTACCTATGGGCTCCAACTGCTCAAATCAATTATGTTTCTGCTCATGACAATGAGA CCCTGTTTGACATCGTGAGCTTGAAGACTCGGATGGACATATCATTAGATGAAAGATGCCGAATAAATCATTTGGCCACAAGTATGATAGCTTTGTCACA GGGAATTCCATTTTTCCATGCTGGTGATGAGATGTTACGCTCTAAATCACTCGACCGTGATTCATACAATTCCGGTGATTGGTTTAACAGGCTGGACTTC ACTTATAATACGAACAATTGGGGTGTCGGCCTTCCTCCAAAAGAGAAAAATGAAAGGAGCTGGCCATTAATAAAGCCCAGATTGGCTGATCCATCATTCA AACCTCACAGAGAACATATCCTTGCGGCTGTTCAAAATTTTACTGATGTGTTACAGATTCGATATTCTTCACCACTGTTCCGTTTACCGACAGCCAAAGC TATCCAGGAACGGGTGCGATTCCACAATGTTGGTCCTTCTTCAGTAGCTGGCGTTATAGTGATGAGCATTGAAGATGGTCATGCTGCCAATCCCGATTTA CCTCAGCTAGATCAAACCTACTCCTGCATTGTAGTAATCTACAATGCTCAACCATGTGAGATATCATTTACCGACCCAGGTCTACAAGCCAGGAATTTCC GGCTCCATCCCGTTCAGGTGAAGACTAGTGATGAAGTGGTGAAGAAATCATCATATGATGCATCCTCAGGATGCTTCACTATACCGTCGAGGACAGCATC TGTGTTTGTGGAGTGTCGGTGA
AA sequence Show only first row Show all	>Lus10037943 pacid=23163813 polypeptide=Lus10037943 locus=Lus10037943.g ID=Lus10037943.BGIv1.0 annot-version=v1.0 MALPLSFPPLISTLSPSSTRTAPLLRLSNSSSHHRPLHSAHSSIHLPFPGFSTASRYPLLRCSSSMPAEVSTAPSQLENCFLYSKAFWVSESVIAWNVDV RDGRCCLYASWTASLSATDDGIQGYDARIEIVEDSGGLPANVVEKFPPIRDYKAFRVPAGVDVKSLLKSQLAVAAFSSDGKCSDATGLQLPGILDEQFSY DGPLGACYSEDAVSLYLWAPTAQINYVSAHDNETLFDIVSLKTRMDISLDERCRINHLATSMIALSQGIPFFHAGDEMLRSKSLDRDSYNSGDWFNRLDF TYNTNNWGVGLPPKEKNERSWPLIKPRLADPSFKPHREHILAAVQNFTDVLQIRYSSPLFRLPTAKAIQERVRFHNVGPSSVAGVIVMSIEDGHAANPDL PQLDQTYSCIVVIYNAQPCEISFTDPGLQARNFRLHPVQVKTSDEVVKKSSYDASSGCFTIPSRTASVFVECR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10037943 [exp]	0	1
AT1G61900			unknown protein		Lus10006773 [exp]	4.5	0.8445
AT4G13630			Protein of unknown function, D...		Lus10007129 [exp]	5.3	0.8288
AT5G26570		ATGWD3, OK1, PW...	PHOSPHOGLUCAN WATER DIKINASE, ...		Lus10037434 [exp]	6.0	0.8675
AT5G28350			Quinoprotein amine dehydrogena...		Lus10018824 [exp]	8.7	0.8678
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Lus10031053 [exp]	9.7	0.8216
AT3G11560			LETM1-like protein (.1.2.3.4)		Lus10017005 [exp]	10.4	0.8538
AT3G61700			Plant protein 1589 of unknown ...		Lus10004016 [exp]	13.4	0.8445
AT3G51480		ATGLR3.6	glutamate receptor 3.6 (.1)		Lus10035980 [exp]	13.5	0.7916
AT1G33170			S-adenosyl-L-methionine-depend...		Lus10017357 [exp]	15.7	0.8109
AT1G68050		ADO3, FKF1	"flavin-binding, kelch repeat,...		Lus10013237 [exp]	15.9	0.8016

Compare expression of checked genes

Lus10037943 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.