Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22930 70 / 4e-14 Protein of unknown function (DUF1635) (.1) AT2G28140 55 / 7e-09 Protein of unknown function (DUF1635) (.1) AT3G44940 50 / 3e-07 Protein of unknown function (DUF1635) (.1) AT2G28690 48 / 2e-06 Protein of unknown function (DUF1635) (.1) AT5G59760 45 / 1e-05 Protein of unknown function (DUF1635) (.1) AT5G09940 40 / 0.0006 Protein of unknown function (DUF1635) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038677 [exp] 293 / 3e-100 AT5G22930 121 / 2e-33 Protein of unknown function (DUF1635) (.1) Lus10021419 [exp] 61 / 6e-11 AT5G22930 182 / 6e-58 Protein of unknown function (DUF1635) (.1) Lus10005884 [exp] 51 / 2e-07 AT2G28690 185 / 2e-58 Protein of unknown function (DUF1635) (.1) Lus10040864 [exp] 49 / 1e-06 AT2G28690 197 / 2e-63 Protein of unknown function (DUF1635) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229200 [exp] 122 / 1e-33 AT5G22930 77 / 2e-16 Protein of unknown function (DUF1635) (.1) Potri.008G032500 [exp] 121 / 3e-33 AT5G22930 75 / 5e-16 Protein of unknown function (DUF1635) (.1) Potri.009G027100 [exp] 56 / 7e-09 AT2G28690 156 / 3e-46 Protein of unknown function (DUF1635) (.1) Potri.009G006000 [exp] 52 / 8e-08 AT5G22930 134 / 3e-38 Protein of unknown function (DUF1635) (.1) Potri.004G216100 [exp] 52 / 1e-07 AT5G22930 140 / 8e-41 Protein of unknown function (DUF1635) (.1) Potri.001G235200 [exp] 49 / 1e-06 AT2G28690 166 / 3e-50 Protein of unknown function (DUF1635) (.1) Potri.008G010100 [exp] 48 / 2e-06 AT2G28690 147 / 4e-43 Protein of unknown function (DUF1635) (.1) Potri.006G256801 [exp] 48 / 2e-06 AT2G28690 162 / 1e-48 Protein of unknown function (DUF1635) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF07795 [flax] [poplar] DUF1635 Protein of unknown function (DUF1635)
Representative CDS sequence Show only first row Show all	>Lus10037944 pacid=23163859 polypeptide=Lus10037944 locus=Lus10037944.g ID=Lus10037944.BGIv1.0 annot-version=v1.0 ATGGAGGAGCATTGCAGCCCTATAGGCTGGACATCTTTCTACCCAGACGAGGTGATAGAGGAGCTGAAACAGTATGTTCACTACACATCAGAGTTGGAAA CCGCAATCCTGACTGCAAGAGAAGAATTGACCACCAGAGAATTGGAAATCCTTCACCTCAAACAACTCCTGACCAAGACAACCAAGGAGAGGAATGACGC CAGAATTCAATGCCAGAGGCTAATGCTCGACAATTCTATCCTCCAACAGCAACTCATCCATCTCAACAACCACAAATTACCGGAGGAATCACCTCCAAGT CTCTGCCTCAAGCTAGAGGAATCACCAACACCACCACCACCACCTTCCATGGGTGCAGAGGAGACAGTGGTGGTTGCGATGGAGAGCGAGCAATGCGGGT ACTCGACAGATGTGGTGGAGAAATTAGCGGCGGAGAGACAGCTTCCGGAGAAAGGGAAGCTGTTGCAGGCGGTGAAAGAAGCAGGGCCGTTACTTCAGAC GCTTATGTTAGCAGGTCCTCTGCCTCAGTGGCAAAACCCTCCTCCTCCGCTTCACAATGTCGACATCCCACCTGTTACCATTTCCTCTGCTAATTCCTCT TCTTCTTCTTCTTCTCCCACAACAACATCCTCCGCCAGATTGATACACCACGACTCTTTCAACAGTTCTACTACTGCAGCTACTTTGACGATCAAGAGGA GTTTTGACCACCTCTGTGACGACTCTCCTCCACCCAATTCTTCTAACAAGTACCAGAAGAAGCTTGATCTACCACGTTGA
AA sequence Show only first row Show all	>Lus10037944 pacid=23163859 polypeptide=Lus10037944 locus=Lus10037944.g ID=Lus10037944.BGIv1.0 annot-version=v1.0 MEEHCSPIGWTSFYPDEVIEELKQYVHYTSELETAILTAREELTTRELEILHLKQLLTKTTKERNDARIQCQRLMLDNSILQQQLIHLNNHKLPEESPPS LCLKLEESPTPPPPPSMGAEETVVVAMESEQCGYSTDVVEKLAAERQLPEKGKLLQAVKEAGPLLQTLMLAGPLPQWQNPPPPLHNVDIPPVTISSANSS SSSSSPTTTSSARLIHHDSFNSSTTAATLTIKRSFDHLCDDSPPPNSSNKYQKKLDLPR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22930			Protein of unknown function (D...		Lus10037944 [exp]	0	1
AT1G35180			TRAM, LAG1 and CLN8 (TLC) lipi...		Lus10033194 [exp]	2.2	0.7845
AT5G63180			Pectin lyase-like superfamily ...		Lus10033037 [exp]	2.2	0.8048
AT5G04360		ATPU1 ,ATLDA	PULLULANASE 1, limit dextrinas...		Lus10000060 [exp]	3.7	0.7813
AT1G31420		FEI1	FEI 1, Leucine-rich repeat pro...		Lus10033291 [exp]	4.0	0.8001
AT3G25110		ATFATA	fatA acyl-ACP thioesterase (.1...		Lus10038190 [exp]	5.2	0.7940
AT1G12990			beta-1,4-N-acetylglucosaminylt...		Lus10006475 [exp]	7.7	0.7905
AT3G48260		WNK3	with no lysine (K) kinase 3 (....		Lus10041947 [exp]	11.7	0.7829
AT1G29530			unknown protein		Lus10011974 [exp]	15.6	0.7535
AT1G22790			unknown protein		Lus10028691 [exp]	17.3	0.7649
AT2G38090	MYB	MYB-R	Duplicated homeodomain-like su...		Lus10027781 [exp]	19.6	0.7738

Compare expression of checked genes

Lus10037944 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.