Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54920 555 / 0 PMR6 powdery mildew resistant 6, Pectin lyase-like superfamily protein (.1) AT5G04310 553 / 0 Pectin lyase-like superfamily protein (.1) AT3G53190 528 / 0 Pectin lyase-like superfamily protein (.1) AT4G13710 461 / 2e-155 Pectin lyase-like superfamily protein (.1.2) AT5G63180 449 / 3e-151 Pectin lyase-like superfamily protein (.1) AT1G67750 444 / 5e-150 Pectate lyase family protein (.1) AT1G04680 444 / 2e-149 Pectin lyase-like superfamily protein (.1) AT4G13210 439 / 1e-147 Pectin lyase-like superfamily protein (.1.2) AT4G24780 436 / 1e-146 Pectin lyase-like superfamily protein (.1.2) AT3G24230 437 / 2e-146 Pectate lyase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10023542 [exp] 659 / 0 AT5G04310 579 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014414 [exp] 547 / 0 AT3G53190 703 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10023917 [exp] 535 / 0 AT3G53190 696 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10038157 [exp] 455 / 3e-153 AT4G13710 685 / 0.0 Pectin lyase-like superfamily protein (.1.2) Lus10022310 [exp] 451 / 3e-152 AT5G63180 626 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10022817 [exp] 447 / 1e-150 AT3G24670 673 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011885 [exp] 446 / 5e-150 AT3G07010 674 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10014887 [exp] 444 / 8e-150 AT5G63180 620 / 0.0 Pectin lyase-like superfamily protein (.1) Lus10011758 [exp] 443 / 4e-149 AT4G13710 703 / 0.0 Pectin lyase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G229000 [exp] 632 / 0 AT5G04310 583 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.008G032700 [exp] 606 / 0 AT5G04310 556 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.006G122000 [exp] 541 / 0 AT3G53190 647 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.003G175900 [exp] 462 / 2e-156 AT4G13710 681 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.001G052300 [exp] 457 / 4e-154 AT4G13710 696 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.014G178100 [exp] 438 / 7e-147 AT3G07010 652 / 0.0 Pectin lyase-like superfamily protein (.1) Potri.001G339500 [exp] 436 / 1e-146 AT4G24780 617 / 0.0 Pectin lyase-like superfamily protein (.1.2) Potri.010G051800 [exp] 437 / 2e-146 AT1G67750 645 / 0.0 Pectate lyase family protein (.1) Potri.008G182200 [exp] 434 / 5e-146 AT1G67750 671 / 0.0 Pectate lyase family protein (.1) Potri.015G087800 [exp] 431 / 2e-144 AT5G63180 657 / 0.0 Pectin lyase-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [flax] [poplar] Pec_lyase-like PF00544 [flax] [poplar] Pectate_lyase_4 Pectate lyase
Representative CDS sequence Show only first row Show all	>Lus10037945 pacid=23163700 polypeptide=Lus10037945 locus=Lus10037945.g ID=Lus10037945.BGIv1.0 annot-version=v1.0 ATGGCTGCTGCTCCAATCATGCTCCCTATTACCGTCTGCATTCTCTCCCTCGTTTCAGCTGCTGTTGCAGAAGCCGGAACCCAGTTCTTGAATCTCACTC TGCCTCACCAGCATCCTTATCCCGATGATATTGCTCACGATGTGCTAAGGCAGGTGAATGAGTCGTTATCAAGAAGGCTGCTTTCGTCCACTCAAGATAA GGACCTCTGCCGGACCGGCAACCCAATCGACGACTGCTGGCGTTGCGACCCCAACTGGACACAGAACCGCCAACGACTCGCTGACTGCGGAATCGGGTTC GGCCGCGGCGCACTCGGCGGGAGAGGTGGCCAGATCTACGTCGTCACCGACTCCTCCGACCACGACCCGGCTAACCCGACTCCAGGAACCCTCCGGTACG GCGTGATCCAAGACGCCCCATTGTGGATCGTCTTCTCTGGAAACATGGTGATCAAACTCAAACACGAGCTCATCTTCAACAGCTACAAAACCGTCGACGG CCGAGGAGCCAATGTCCACATCACGGGGAACGGATGCCTGACTTTACAGTACGTGAACCACATAATAATCCACAACATCCGGATCTACAACTGCAAGCCG TCGGGGAACACGAACGTGGCCGCATCGCCGACTCACGTCGGGTACAGGGGGAGATCGGACGGCGATGGGGTTTCCCTGTTTGGAGCCCACAACGTGTGGA TCGATCACTGTACGTTATCGTCTTGTACCGACGGACTGATCGATGTGATAATGGGGTCCACGGGGATCACCATCTCCAACAATTACTTCTCCCATCACAA CGAGGTGATGCTGATGGGACACGACGACGGTTACGCGCTGGATACCGGGATGCAGGTCACCATTGCGTTCAACAGATTCGGTGAGGAGCTGCAAGACATC CCCTCCACCCTCCCTTTTCCTCCCTCTCCTCTGGCCACTTCCATTCATTTTCACAGTACAGAGAAGCAAGCAGCAGCAGCGCGCAGAGCCTTGGAAATAA TAGAGGGGAGTAGGAAAAACAACCAAACCTCCCCCCTCTCAAACATTTCCATGGCTGCTGCTTCAATCATGCTCCCTATTACCGTCTGCATTCTCTTCAT CTTTTCGGCTACTGTTGCAGAAGCCGAAACCCAGTTCTTGAATCTCACTCTGCCTCACCAGCATCCTTATCCCGATGATATTGCTCATGATGTGCTAAGG CAGGTGAATGAGTCGCTATCAAGAAGGCTGCTTTCGTCCACTCAAGATAAGGACCTCTGCCGAACTGGCAACCCAATCGACGACTGCTGGCGTTGCGACC CCAACTGGTCACAGAACCGCCAACGACTCGCCGACTGCGGAATCGGGTTCGGCCGCGGCGCACTCGGCGGGAGAGGTGGCCAGATCTACGTTGTCACCGA CTCCTCCGACCACGACCCGGCTAATCCAACTCCAGGAACCCTCCGGTACGGCGTGATCCAAGACGCCCCTTTGTGGATCGTCTTCTCTGGAAACATGGTG ATCAAGCTCAAACACGAGCTCATCTTCAACAGCTACAAAACCGTCGACGGCCGAGGAGCCAATGTCCACATCACGGGGAACGGATGCCTGACTTTACAGT ACGTGAACCACATAATAATCCACAACATCCGGATCTACAACTGCAAGCCGTCTGGGAACACCAACGTGGCCGCATCTCCGACGCACGTCGGGTACAGGGG GAGATCGGACGGCGATGGGGTTTCCCTGTTTGGAGCCCACAACGTGTGGATCGTTCACTGTACGTTATCGTCTTGTACCGACGGACTGATCGATGTGATA ATGGGGTCCACCGGGGTCACCATCTCCAACAATTACTTCTCCCATCACAACGAGGTGATGCTGATGGGACACGACGACGGTTACGCGCTGGATACCGGGA TGCAGGTCACCATTGCGTTCAACAGATTCGGTGAGGAGCTGGTGCAGCGTATGCCTCGCTGTAGGCGCGGCTATATTCACGTCGTTAATAATGATTTTAC TTACTGGAAGATGTATGCTATCGGCGGCAGCGCTAATCCGACGATTAATAGCCAGGGGAATCGCTACATTGCCCCTGCCGATCCCGACGCCAAAGAGGTA ACGAAGCGCGTGGACACGGAGGACAATGAGTGGACAGACTGGAATTGGAGAACGGACGGGGACATAATGGTAAATGGAGCATTCTTTGTACCGTCGGGAG CAGGGGGCGTGAGCGTTCAGTATCAAAAGGCTTCCAGCGTGGACCCCAAGTCAGCTGTGCTTGTTGACCAGCTCACCTTGAACGCCGGCGTCCTCGGTGG TCCCAGATCAGAACTTTCTGAGGAGGGTACCAACTTGAGGTGTGAACTGGAGGATTAG
AA sequence Show only first row Show all	>Lus10037945 pacid=23163700 polypeptide=Lus10037945 locus=Lus10037945.g ID=Lus10037945.BGIv1.0 annot-version=v1.0 MAAAPIMLPITVCILSLVSAAVAEAGTQFLNLTLPHQHPYPDDIAHDVLRQVNESLSRRLLSSTQDKDLCRTGNPIDDCWRCDPNWTQNRQRLADCGIGF GRGALGGRGGQIYVVTDSSDHDPANPTPGTLRYGVIQDAPLWIVFSGNMVIKLKHELIFNSYKTVDGRGANVHITGNGCLTLQYVNHIIIHNIRIYNCKP SGNTNVAASPTHVGYRGRSDGDGVSLFGAHNVWIDHCTLSSCTDGLIDVIMGSTGITISNNYFSHHNEVMLMGHDDGYALDTGMQVTIAFNRFGEELQDI PSTLPFPPSPLATSIHFHSTEKQAAAARRALEIIEGSRKNNQTSPLSNISMAAASIMLPITVCILFIFSATVAEAETQFLNLTLPHQHPYPDDIAHDVLR QVNESLSRRLLSSTQDKDLCRTGNPIDDCWRCDPNWSQNRQRLADCGIGFGRGALGGRGGQIYVVTDSSDHDPANPTPGTLRYGVIQDAPLWIVFSGNMV IKLKHELIFNSYKTVDGRGANVHITGNGCLTLQYVNHIIIHNIRIYNCKPSGNTNVAASPTHVGYRGRSDGDGVSLFGAHNVWIVHCTLSSCTDGLIDVI MGSTGVTISNNYFSHHNEVMLMGHDDGYALDTGMQVTIAFNRFGEELVQRMPRCRRGYIHVVNNDFTYWKMYAIGGSANPTINSQGNRYIAPADPDAKEV TKRVDTEDNEWTDWNWRTDGDIMVNGAFFVPSGAGGVSVQYQKASSVDPKSAVLVDQLTLNAGVLGGPRSELSEEGTNLRCELED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10037945 [exp]	0	1
AT1G06850	bZIP	ATBZIP52	basic leucine-zipper 52 (.1.2)		Lus10009907 [exp]	1.4	0.8776
AT1G66150		TMK1	transmembrane kinase 1 (.1)		Lus10010472 [exp]	2.8	0.8578
AT3G54920		PMR6	powdery mildew resistant 6, Pe...		Lus10038679 [exp]	4.4	0.7875
AT4G37650	GRAS	SGR7, SHR	SHORT ROOT, SHOOT GRAVITROPISM...		Lus10019281 [exp]	4.6	0.8328
AT3G25700			Eukaryotic aspartyl protease f...		Lus10041494 [exp]	6.0	0.8380
AT2G40620	bZIP	AtbZIP18	Basic-leucine zipper (bZIP) tr...		Lus10042211 [exp]	6.9	0.8483
AT2G28150			Domain of unknown function (DU...		Lus10016150 [exp]	7.1	0.7931
AT1G74160			unknown protein		Lus10034678 [exp]	7.7	0.8339
AT5G14450			GDSL-like Lipase/Acylhydrolase...		Lus10014592 [exp]	8.5	0.8136
AT1G51940			protein kinase family protein ...		Lus10037586 [exp]	8.7	0.8363

Compare expression of checked genes

Lus10037945 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.