Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04290 585 / 8e-180 SPT5L, KTF1 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) AT4G08350 214 / 5e-56 GTA2, GTA02 global transcription factor group A2 (.1) AT2G34210 203 / 8e-53 Transcription elongation factor Spt5 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038680 [exp] 1633 / 0 AT5G04290 727 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Lus10028630 [exp] 209 / 1e-54 AT4G08350 1357 / 0.0 global transcription factor group A2 (.1) Lus10018928 [exp] 207 / 6e-54 AT4G08350 1358 / 0.0 global transcription factor group A2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032800 [exp] 726 / 0 AT5G04290 635 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Potri.010G228766 [exp] 642 / 0 AT5G04290 606 / 0.0 SPT5-LIKE, kow domain-containing transcription factor 1 (.1) Potri.004G162500 [exp] 226 / 6e-60 AT4G08350 1394 / 0.0 global transcription factor group A2 (.1) Potri.009G124200 [exp] 223 / 5e-59 AT4G08350 1372 / 0.0 global transcription factor group A2 (.1) Potri.010G228883 [exp] 49 / 3e-05 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0439 [flax] [poplar] NusG-like PF03439 [flax] [poplar] Spt5-NGN Early transcription elongation factor of RNA pol II, NGN section
Representative CDS sequence Show only first row Show all	>Lus10037946 pacid=23163728 polypeptide=Lus10037946 locus=Lus10037946.g ID=Lus10037946.BGIv1.0 annot-version=v1.0 ATGGACAAGGGTAAAGGAGTCGCCTCCTCCGGCAAGCGTAAGAAAGGCGACGCCGACGATGACAAGACCGGCACCGGATTCAAGAAGCGGAACCGCGACG TCCTTCGCTTCTTCGAGGACGCTGCTGATGTCGACAATGAAGACGACTTCGACTTCAGCGATTTGGACGATCTGAGCGATTTGGACGATGATGATTTTGA TGTCGAGTTAAAAGTAAAGAAGGACCCTGAAAAATCACACATCCCTTTCATTCCAAAGGAGGAGCAGATGGACGAGGATGAATTTGATAAGATGATGGAG GAAAGATATAAGGATAGTGCTGGCTTTGTTACATACGCTGAAGATCCTTTTGAAGCAAAATTGGCAGAAAGGGATTCTGTTATGCCTTCAGATAAGGATC CAGCCATCTGGAAAGTTAAATGCATGATTGGACGTGAAAAACATTCTGCCTTCTGTCTCATGCAAAAATTCGTTGACTTGAAGTCCCTTGGTACCAAACT GGACATAATTTCCGCATTCTCGATTGACCATGTGAAGGGTTATATTTACATTGAAGCTGAACGGCAACACCATCTTGTTGAGGCATGCAAAGGGCTTTCA ACAATATACACTTCCAGGGTGTCTACAGTTCCAGCGAACGATGTTACTCATTTGATATCTGTTCGGTGCAAACAAAGTCAAGTAACAAAGGGCATGTGGG CCCGTGTCAAGGCTGGGAATTATAAAGGAGACCTTGCACAGATTGTCGACGTAAATGGTTCACGTAGAAGGGCATTAGTGAAGATAATTCCAAGAATTGA TCTACATGCTCTGGCTGAAAAATATGGTGGTGGAAAGGCACTTAAGAAAACTGATGTACCAGCTCCGAGGCTGATCAACTCGAATGAACTTGAGGAGTTC CGTCCTCTTATCCAGTTTAGACGTGATCGCGACAGTGGCATGATGTTTGAGGTTCTTGATGGTTTGATGCTCAAGGATGGATTCTTGTACAAGAAAGTAT CTTTGGATTCCTTAAATTTCTGGAGTATAATGCCCTCAAAAGAGGAGTTATTGAAGTTTGAATCTTCTGAGAATAATCAATCTGGCAATTTAGAATGGCT TACACAGATTTATGGTGCAAAAAAGAAAAAGAAGGTAATTAGGAATGAGAAAGGTGGGGAGAAAGGTGAAAGTTCGTCTGGGACCGTAAGTCAAGCGACC TTTGAGATATATGATTTTGTGTGCTTCCGGCGCAAAGAATTTGGTATTGTTGTTGGAATGGAGAAGGATGGTAATTGCAAGATTCTAAAAGAGGGACCGC AAGGACCTGTTGTCGTAACTATCGAACAGAAAGAAGCAAAAACTGGAGCTGCAGATATGAAATTTACTGCGCTAGATCAGCATAAAAAGATCATTTCTCA CAATGATACTGTCAGGATTTTGGAGGGTCCATTGAAGGATAAGCAGGGAATTGTAAAACAAATTTATCGAGGAATTGTCTTCATACATGATGATAATGAG ACCGAAAATGGTGGCTATTTTTGCTCAAGAGCTCAAATTTGTGAAAAAGTCAAGCTTTCTTCGGAGCTATTCAAAGAGAAGGGTGATGAATCTAGCTTTG GAGGTTTTGATGATACCCCATCATCTCCAAAATCCCCTTTGTCACCTAAAGCACCATTCCAAGCAAGGGAAAATAATGATTCCAACAGGAGGGAAAATGA AGCTATTTACTCCATTGGCCAGACCTTGAGAATAAAGTTAGGACCTCTGAAGGGCTACCTTTGTCGTGTATTGGCTGTACGGCGCTTCGATGTTACTGTG AAACTTGATTCTCAACCGAAAACTCTTTCGGTAAAATTTGAGCATCTCTCTGAGGTCCGTGGGAGGAGTTACAATGTGTCTGGCAGTGAGGATCCAGAGG CTGTTTCTTTCAAACCTTTTGATGCAATTGGAGATGATGGTGGTTCTGGAGGTTGGACGAGTGGGGCTGGAACTTCGGGAGGAGCTGATGGGTGGAACAC TGGAGTTTTGGCTGCAGAGAGGGATGCCTGGGCCAGCTCCTCTGCTCAAAAGCCTGACCCTGGTGGTCCATCAAATTCTAAAGACCAAGAAGATAATGCT TGGGAGAAGAAATCGACTATTAATCAGAATTCTTCCTGGGGTGCAGCAGCTTCTGATGACAAAGCCATTACCAACACTGATCAAGCTAGTGGCTGGGAGA ATAGTGGTGATGCTTGGGTCAAAGCTCCCACGAATACTGTTAGCAGCAGAACATCTGATAGTTGGGGGAAAGTCGTTGACGAGAAAGTGACTGTGAGTTC TTGGGGTGCTTCTGCATCTGATGACAGACTTGCTAAGCCTGATAAAGCTTCTGGTTGGGGAAACAGTGGAGATGGCTTAAAAAATGCTTCTTCTGAAATA GGTGCTTGCAGTGGAGCATCAGATAGTTGGGGCAAAGCACTCGAATCCAGTAAAGATCAAACTGATGGTGCTTCTGCGTGGGACAAAGGAAAGAATGTTG CTGGAAATCCGACCAGCAGTTGTGGTGGTGGTTCCTGGGCGAAGGTAAATGAAGATGCTAGTAATGGAGGAGCGTTGGAGAAGAATAAGAGCATGGGTGG AGATTGGGGAAATTCTCAGTCTTGTCAAGAGAACTCTAGCTGGAACGAGAAAACTAATGAGTTTATGAAAGAGAAAGAGGTTAAGGAGCATGGAGAAGCA TGGAAGATTGGGGATGGATCATCAAGCTGGGATAAGAAAACTGGTGCCTCAAGTGATGCCCAGCCACTATCTGCTGATGCAGGTGGCACTGCAGATGGTA CATGGGGTAAAAAGGCTGATTGGAACTCTGGGTCTGGTGATGCCGGCCAAGACTCCAGTTGGGGAAAGAAGAGCAATTGGAACTCTAGCTCTGCTGATGT TTCTGCGGATAATACAGAAACCTCTAAATGGGGTAAAAAGGGTGACTGGGGTTCTGGTTCTAATGATGCCAACATTAGTTCCAGCTGGGAAAAGAAGTCT GTTAATGTTGGCGGGAACACAGACTCTATGTGGGGTAGAAAGACTGATGGGAACTCCGGGTCTGATGGCGTAGGCGGAGATTCTGGCACTGGTAAAAAGG CAAACTGGGGCTCTCGCTCTAGTGATGGTAGCATTGGTCCCAGCTGGGAAAAGAAGTCTGTTGATGTGGGTGGTAACACCGACTCTACATGGGGTAAAAA GACTGATGGGAACTCAGGGTCTGATGATGTAGGTGGAAATGCTGGTTCTTCATGGGGTAAAAAGCCTAACTGGGGCTCTGCCTCTAACGATGCTGACCAG GGTTCCAGTTGGGGAAAGAAGAGCAATTGGAACTCTGGCTCTGACGAGGGAGGTGGAAGTGCAGGCTCTGGATGGGGTAAAAAGGGTGACTGGAAGTCTG GTTCTAATGATGCCAATGATTCTGGTTGGGGCAGCAAAGGTAGCTGGAACTCTGGAGTTGGGAATACAAGCCAAGACTCTGCTGGAGGGGACGCTGATGA TGGCAATCATGGAAACTGGAGGGGTGGTTTTAGGGGTAGAGGGGACAGGGGTGGTTTTAGGGGTAGAGGGGACAGAGGTGGTTTTGGAGGTAGAGGGGAA AGAGGTGGTTTTGGAGGTAGAGGGGACAGAGGTGGTTTTGGAGGTAGAGGGGATAGAGGAGGAGGGTTCAGGGGCAGAGGGGATAGAGGTGGTTTTGGAG GCCGAGGCAGATTTGGTGGAGGAGACACTGACAATGCAGGTTACTCGGAGAGGGGCGGTTTTGGAGGCAGAGGCGGATTTGGTGGTAGAGGCAGAGGAAG TAGCTGGAATGATGGAAACAATTCTGGTGGTGGATGGGAAGGAAATAAAGGAGGGGGGGGGGGGTGGGGGGGGGGGGGGGAGGGGAGAGGCGGGGGGATA AGAAGAGTTGGAGCTCTTCTGGGAACGGTGGAAGTAACAATGGAACAGGAGGTGGGTGGAGTTCACAAGGTGGTTCTGGATGGGGGGAACAGTCAGGAAA GGCTGCTGGTCAAGGTGAGAATGGTGGTGTTAAGGATGGTGGGAGTAGTTGGAGCAAGGGAACCAGTTCAAGTGGCGAAGTTGGTGGAGGATGGGGTGCT AAAGGTGGTGCTGGGTGGGGTGAGGCTGGTGGGAGGGGGACGCCAGGAGCTACCAATGCTGAATCATGTTGGTGGGGGGGATAAGAAGAGTTGGAGCTCT TCTGGGAACGGTGGAAGTAACAATGGAACAGGAGGTGGGTGGAGTTCACAAGGTGGTTCTGGATGGGGGGAACAGTCAGGAAAGGCTGCTGGTCAAGGTG AGAATAGTGGTATTAAGGAAGGTGGGAGTAGTTGGAGCAAGGGAACCAGTTCAAGTGGCGAAGGTGGTGGAGGATCGGGTGCTAAAGGTGGTGCTGGGTG GGGTGAGGCTGGTGGGAGGGGGACGCCAGGAGCTACCAATGCTGAATCAAGAGGGGGGGGTGAACCTGGGGGCGCTGCCGCCTGGGGNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNATT GAAAGAGACAGAACCAACAAATTATTAATCAAACAGGGAGCGGTGGTGGGTGGCGCCGTCCCGCTCCCGAATATCATCCCGAACACATCTCCATCTCCGT CCCCGCCGCTGCCGCTGCCGGTGGACCCCGTGTACGTTGTTCCTGCCCCACCTCCGCTGAATCCCGGGTTCATTGTTCTCTCCCCTGTGTTACTGCCCAA ATAA
AA sequence Show only first row Show all	>Lus10037946 pacid=23163728 polypeptide=Lus10037946 locus=Lus10037946.g ID=Lus10037946.BGIv1.0 annot-version=v1.0 MDKGKGVASSGKRKKGDADDDKTGTGFKKRNRDVLRFFEDAADVDNEDDFDFSDLDDLSDLDDDDFDVELKVKKDPEKSHIPFIPKEEQMDEDEFDKMME ERYKDSAGFVTYAEDPFEAKLAERDSVMPSDKDPAIWKVKCMIGREKHSAFCLMQKFVDLKSLGTKLDIISAFSIDHVKGYIYIEAERQHHLVEACKGLS TIYTSRVSTVPANDVTHLISVRCKQSQVTKGMWARVKAGNYKGDLAQIVDVNGSRRRALVKIIPRIDLHALAEKYGGGKALKKTDVPAPRLINSNELEEF RPLIQFRRDRDSGMMFEVLDGLMLKDGFLYKKVSLDSLNFWSIMPSKEELLKFESSENNQSGNLEWLTQIYGAKKKKKVIRNEKGGEKGESSSGTVSQAT FEIYDFVCFRRKEFGIVVGMEKDGNCKILKEGPQGPVVVTIEQKEAKTGAADMKFTALDQHKKIISHNDTVRILEGPLKDKQGIVKQIYRGIVFIHDDNE TENGGYFCSRAQICEKVKLSSELFKEKGDESSFGGFDDTPSSPKSPLSPKAPFQARENNDSNRRENEAIYSIGQTLRIKLGPLKGYLCRVLAVRRFDVTV KLDSQPKTLSVKFEHLSEVRGRSYNVSGSEDPEAVSFKPFDAIGDDGGSGGWTSGAGTSGGADGWNTGVLAAERDAWASSSAQKPDPGGPSNSKDQEDNA WEKKSTINQNSSWGAAASDDKAITNTDQASGWENSGDAWVKAPTNTVSSRTSDSWGKVVDEKVTVSSWGASASDDRLAKPDKASGWGNSGDGLKNASSEI GACSGASDSWGKALESSKDQTDGASAWDKGKNVAGNPTSSCGGGSWAKVNEDASNGGALEKNKSMGGDWGNSQSCQENSSWNEKTNEFMKEKEVKEHGEA WKIGDGSSSWDKKTGASSDAQPLSADAGGTADGTWGKKADWNSGSGDAGQDSSWGKKSNWNSSSADVSADNTETSKWGKKGDWGSGSNDANISSSWEKKS VNVGGNTDSMWGRKTDGNSGSDGVGGDSGTGKKANWGSRSSDGSIGPSWEKKSVDVGGNTDSTWGKKTDGNSGSDDVGGNAGSSWGKKPNWGSASNDADQ GSSWGKKSNWNSGSDEGGGSAGSGWGKKGDWKSGSNDANDSGWGSKGSWNSGVGNTSQDSAGGDADDGNHGNWRGGFRGRGDRGGFRGRGDRGGFGGRGE RGGFGGRGDRGGFGGRGDRGGGFRGRGDRGGFGGRGRFGGGDTDNAGYSERGGFGGRGGFGGRGRGSSWNDGNNSGGGWEGNKGGGGGWGGGGEGRGGGI RRVGALLGTVEVTMEQEVGGVHKVVLDGGNSQERLLVKVRMVVLRMVGVVGAREPVQVAKLVEDGVLKVVLGGVRLVGGGRQELPMLNHVGGGDKKSWSS SGNGGSNNGTGGGWSSQGGSGWGEQSGKAAGQGENSGIKEGGSSWSKGTSSSGEGGGGSGAKGGAGWGEAGGRGTPGATNAESRGGGEPGGAAAWXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXI ERDRTNKLLIKQGAVVGGAVPLPNIIPNTSPSPSPPLPLPVDPVYVVPAPPPLNPGFIVLSPVLLPK

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10037946 [exp]	0	1
AT5G04290		SPT5L, KTF1	SPT5-LIKE, kow domain-containi...		Lus10038680 [exp]	1.7	0.9262
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10016332 [exp]	2.0	0.9455
AT1G26110		DCP5	decapping 5 (.1.2)		Lus10033287 [exp]	4.6	0.9144
AT4G20940			Leucine-rich receptor-like pro...		Lus10023260 [exp]	4.9	0.9294
AT5G46070			Guanylate-binding family prote...		Lus10013965 [exp]	5.2	0.9010
AT1G54610			Protein kinase superfamily pro...		Lus10012805 [exp]	9.5	0.9146
AT2G40030		NRPE1, DMS5, AT...	DEFECTIVE IN MERISTEM SILENCIN...		Lus10002748 [exp]	10.0	0.9164
AT5G43810		PNH, ZLL, AGO10	ZWILLE, PINHEAD, ARGONAUTE 10,...		Lus10006627 [exp]	13.8	0.8667
AT3G43920		DCL3, ATDCL3	dicer-like 3 (.1.2.3)		Lus10016367 [exp]	14.1	0.8962
AT2G18510		EMB2444	embryo defective 2444, RNA-bin...		Lus10024024 [exp]	14.4	0.9023

Compare expression of checked genes

Lus10037946 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.