Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60790 919 / 0 ABCF1, ATGCN1 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) AT1G64550 400 / 9e-130 SCORD5, AtGCN20, AtABCF3, ABCF3, ATGCN3 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) AT3G54540 391 / 3e-126 ABCF4, ATGCN4 ATP-binding cassette F4, general control non-repressible 4 (.1) AT5G64840 197 / 4e-54 ABCF5, ATGCN5 ATP-binding cassette F5, general control non-repressible 5 (.1) AT5G09930 188 / 5e-51 ABCF2, ATGCN2 ATP-binding cassette F2, ABC transporter family protein (.1) AT3G28415 68 / 2e-11 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28390 65 / 1e-10 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT2G36910 65 / 1e-10 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G28010 64 / 3e-10 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G27940 64 / 3e-10 ABCB13, PGP13 ATP-binding cassette B13, P-glycoprotein 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038681 [exp] 1055 / 0 AT5G60790 1021 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10028810 [exp] 961 / 0 AT5G60790 1013 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Lus10032431 [exp] 402 / 1e-130 AT1G64550 1244 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10029363 [exp] 387 / 8e-125 AT3G54540 1139 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10023043 [exp] 402 / 5e-124 AT1G64550 1249 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Lus10016184 [exp] 385 / 6e-124 AT3G54540 1141 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Lus10006804 [exp] 186 / 4e-50 AT5G64840 1050 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10005798 [exp] 186 / 6e-50 AT5G64840 1049 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Lus10000013 [exp] 79 / 8e-18 AT3G54540 172 / 8e-52 ATP-binding cassette F4, general control non-repressible 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G214300 [exp] 952 / 0 AT5G60790 944 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.009G007800 [exp] 949 / 0 AT5G60790 955 / 0.0 ARABIDOPSIS THALIANA GENERAL CONTROL NON-REPRESSIBLE 1, ATP-binding cassette F1, ABC transporter family protein (.1) Potri.001G087300 [exp] 397 / 1e-128 AT1G64550 1145 / 0.0 susceptible to coronatine-deficient Pst DC3000 5, general control non-repressible 20, ATP-binding cassette F3, general control non-repressible 3 (.1) Potri.010G254400 [exp] 396 / 2e-128 AT3G54540 1049 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.008G003300 [exp] 387 / 9e-125 AT3G54540 1060 / 0.0 ATP-binding cassette F4, general control non-repressible 4 (.1) Potri.007G080600 [exp] 196 / 2e-53 AT5G64840 936 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.005G084800 [exp] 189 / 3e-51 AT5G64840 983 / 0.0 ATP-binding cassette F5, general control non-repressible 5 (.1) Potri.011G133800 [exp] 67 / 3e-11 AT3G28345 1268 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.001G417600 [exp] 67 / 4e-11 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.015G059700 [exp] 63 / 5e-10 AT5G39040 874 / 0.0 ARABIDOPSIS THALIANA TRANSPORTER ASSOCIATED WITH ANTIGEN PROCESSING PROTEIN 2, ALUMINUM SENSITIVE 1, ATP-binding cassette B27, transporter associated with antigen processing protein 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10037947 pacid=23163841 polypeptide=Lus10037947 locus=Lus10037947.g ID=Lus10037947.BGIv1.0 annot-version=v1.0 ATGGTGTCAGACGCGAGCAAGAAGAAGGCGGCACAGAAGAAGGCAGCGGCTGCGGCCAAGAGAGGAGGAAAGGCAGCTGCCTCCGCCGCTTCCTCTAAAG CAGCAGCTGATTCTTCTCAGAACGGCAGCGCTGTCGACAAGTTGTCTAATGGGATTGGAACCATGGAGATTTCCGATCGTAATTGTACGGGAGTCCTTTG TTCTCATCCTCTCTCCAGAGATATTCGGATTGAGTCTTTATCGGTGACATTTCATGGACATGATCTCATTGTCGATTCCTTGTTGGAGCTTAACTACGGA AGGCGGTATGGGTTGCTTGGATTAAATGGTTGTGGAAAATCAACTTTGCTTACTGCAATTGGGTTTCGAGAGCTTCCAATTCCTGAACACATGGATATAT ATCACCTTACCAGAGAGATCGAAGCCTCTGACATGTCTTCACTTGAGGCTGTCATCAGCTGTGATGAGGAAAGGCTTAAACTTGAAAAAGAAGCTGAGCT GTTGGCAAGCCAGGATGATGGCGGTGGTGAAGCTCTTGAACGCATTTATGAGCGCTTGGATACTTTGGATGCATCGACAGCTGAGAAACGTGCAGCTGAA ATCTTATTTGGTCTTGGTTTTGACAAGCAGATGCAAGGAAAGAAGACCAAAGATTTCTCTGGTGGTTGGAGAATGAGGATTGCTCTTGCTAGAGCTTTGT TCATGAATCCTACTATCCTCTTGCTTGATGAGCCTACTAATCATCTTGGGAAAGTAATGCCAACCCCCACTTCTCTTATATCTAAGTACGTTATTCTTGT TTCGGTTCCTCAAGCCTTAGGAATTGTGAAGAGGAGGAACCGAGGCGACCTCCTTCTTGCCAATTTGGAAGCTTGTGTTTGGTTGGAGGAAATGCTGAAG AATTTCAACAGGATCCTAGTGGTGGTTTCTCATTCCCAAGATTTCTTGAATGGTGTCTGCACAAATATCATACACATGCAGAACAAGACTTTGAAGATTT ATTCAGGAAACTATGACCAGTATGTTCAGACTCGTGGTGAGTTAGAAGAGAATCAGATGAAGCAGTACAGGTGGGAGCAAGAGCAGATTGCTAATATGAA AGAGTATATTGCTCGATTTGGGCATGGATCAGCTAAGTTGGCCCGTCAGGCACAAAGCAAGGAAAAGACACTTGCTAAGATGGAGCGTGGTGGGCTAGCT GAGAAGGTAGTCAGAGACAAAGTTCTGGTGTTCCGCTTTGTTGATGTGGGAAAGCTTCCACCACCTGTGCTTCAATTTGTGGAAGTGTCATTTGGGTATA CACCTGAACATCTTATCTACAAAAACATAGAATTTGGGGTTGATTTGGATTCTAGGGTAGCCTTGGTTGGACCGAATGGTGCTGGTAAGAGTACACTGTT GAAGTTGATGACTGGGGATTTGTTCCCTAGTGATGGTATGGTTCGGAGGCATAATCACCTGAGGATAGCACAATATCATCAGCACTTGGCTGAGAAGCTG GACTTGGACATGTCTGCTCTGCTATACATGATGAGAGAGTACCCAGGAAACGAGGAAGAGAAAATGAGAGGTGCTATTGGGAAATTTGGGCTGACAGGAA AAGCGCAGGTGATGCCAATGAAGAACCTGTCAGATGGACAGAAGAGCAGGGTGATATTTGCTTGGTTGGCTTACAGGCAGCCACAGTTGCTGCTGCTGGA TGAACCAACAAATCACTTGGATATTGAAACCATAGACTCTCTGGCTGAAGCACTGAACGAGTGGGACGGAGGGTTGGTGCTTGTTAGTCACGATTTCAGG CTGATAAACCAGGTGGCGAAGGAGATATGGGTTTGTGACAATCAGTCGGTTACACCATGGGCAGGTGACATCATGGACTTCAAGCAGCACCTTCCCGGGC TGCTTGATGTCGGAGCGGGTGGTGATCTCTTTCCGCCAGCGTCTCCGTGTGGCCATATTGAAACAGATGACACAGAGAGAGTAAAGAGACGAGTTGTGGT TTTGAAGGGGGCACCGTATATTGTGTGCCCTGAGAGCGCTATTAGGTGA
AA sequence Show only first row Show all	>Lus10037947 pacid=23163841 polypeptide=Lus10037947 locus=Lus10037947.g ID=Lus10037947.BGIv1.0 annot-version=v1.0 MVSDASKKKAAQKKAAAAAKRGGKAAASAASSKAAADSSQNGSAVDKLSNGIGTMEISDRNCTGVLCSHPLSRDIRIESLSVTFHGHDLIVDSLLELNYG RRYGLLGLNGCGKSTLLTAIGFRELPIPEHMDIYHLTREIEASDMSSLEAVISCDEERLKLEKEAELLASQDDGGGEALERIYERLDTLDASTAEKRAAE ILFGLGFDKQMQGKKTKDFSGGWRMRIALARALFMNPTILLLDEPTNHLGKVMPTPTSLISKYVILVSVPQALGIVKRRNRGDLLLANLEACVWLEEMLK NFNRILVVVSHSQDFLNGVCTNIIHMQNKTLKIYSGNYDQYVQTRGELEENQMKQYRWEQEQIANMKEYIARFGHGSAKLARQAQSKEKTLAKMERGGLA EKVVRDKVLVFRFVDVGKLPPPVLQFVEVSFGYTPEHLIYKNIEFGVDLDSRVALVGPNGAGKSTLLKLMTGDLFPSDGMVRRHNHLRIAQYHQHLAEKL DLDMSALLYMMREYPGNEEEKMRGAIGKFGLTGKAQVMPMKNLSDGQKSRVIFAWLAYRQPQLLLLDEPTNHLDIETIDSLAEALNEWDGGLVLVSHDFR LINQVAKEIWVCDNQSVTPWAGDIMDFKQHLPGLLDVGAGGDLFPPASPCGHIETDDTERVKRRVVVLKGAPYIVCPESAIR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G60790		ABCF1, ATGCN1	ARABIDOPSIS THALIANA GENERAL C...		Lus10037947 [exp]	0	1
AT1G47820			unknown protein		Lus10031924 [exp]	1.7	0.8572
AT3G46790		CRR2	CHLORORESPIRATORY REDUCTION 2,...		Lus10001558 [exp]	3.0	0.8279
AT4G29720		ATPAO5	polyamine oxidase 5 (.1)		Lus10006012 [exp]	4.9	0.8367
AT2G32070			Polynucleotidyl transferase, r...		Lus10003635 [exp]	8.0	0.8335
AT5G55740		CRR21	chlororespiratory reduction 21...		Lus10007840 [exp]	11.7	0.8443
AT5G27930			Protein phosphatase 2C family ...		Lus10029874 [exp]	15.2	0.7938
AT4G02750			Tetratricopeptide repeat (TPR)...		Lus10002092 [exp]	17.5	0.7910
AT3G47300		SELT	SELT-like protein precursor (....		Lus10002479 [exp]	17.9	0.8013
AT2G18940			Tetratricopeptide repeat (TPR)...		Lus10000036 [exp]	21.2	0.8333
AT1G58210		EMB1674	EMBRYO DEFECTIVE 1674, kinase ...		Lus10001866 [exp]	21.2	0.8217

Compare expression of checked genes

Lus10037947 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.