Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 795 / 0 Major facilitator superfamily protein (.1) AT2G28120 703 / 0 Major facilitator superfamily protein (.1) AT1G74780 308 / 6e-98 Nodulin-like / Major Facilitator Superfamily protein (.1) AT1G18940 302 / 1e-95 Nodulin-like / Major Facilitator Superfamily protein (.1) AT5G50520 300 / 1e-94 Major facilitator superfamily protein (.1) AT5G50630 300 / 1e-94 Major facilitator superfamily protein (.1) AT2G34355 295 / 8e-93 Major facilitator superfamily protein (.1) AT2G34350 285 / 3e-89 Nodulin-like / Major Facilitator Superfamily protein (.1) AT4G34950 267 / 9e-82 Major facilitator superfamily protein (.1) AT2G16660 265 / 2e-81 Major facilitator superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038682 [exp] 1014 / 0 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037949 [exp] 908 / 0 AT2G39210 807 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 703 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 697 / 0 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 580 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 526 / 0 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10025123 [exp] 299 / 5e-94 AT5G14120 674 / 0.0 Major facilitator superfamily protein (.1) Lus10032034 [exp] 277 / 2e-85 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2) Lus10025053 [exp] 262 / 7e-80 AT4G34950 793 / 0.0 Major facilitator superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032901 [exp] 781 / 0 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 724 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 664 / 0 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 651 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 643 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.001G194500 [exp] 296 / 2e-97 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 302 / 3e-95 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.012G098900 [exp] 292 / 4e-91 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.004G173400 [exp] 283 / 6e-88 AT4G34950 682 / 0.0 Major facilitator superfamily protein (.1) Potri.009G132700 [exp] 279 / 2e-86 AT4G34950 661 / 0.0 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10037948 pacid=23163928 polypeptide=Lus10037948 locus=Lus10037948.g ID=Lus10037948.BGIv1.0 annot-version=v1.0 ATGACAACGGCGGCCCCCGGCGGCCTGGCCGTCCACATAGTGACCGGAAGATGGTTCATGGTGTTCGCCTGCTTCCTAATCATGTCCGCCGCCGGCGCCA CATACATGTTTGGCCTCTACTCCGGCGACATCAAAACGTCCCTCGGTTACGACCAAACAACCTTGAATCTCCTCAGCTTCTTCAAAGACCTCGGCGGCAA CGTCGGAGTCCTCTCTGGCCTAATAGCCGAGGTCACCCCAACTTGGTTCGTCCTCACAATCGGCGCCGTGCTAAATTTCTTCGGATACTTCATGATCTGG CTCGCCGTCACCAAAAAAATTAACGCCGTTAAAGTATGGCACATGTGTCTCTACATCTGCATCGGGGCCAACTCCCAGGCCTTTGCCAACACGGGAGCGT TGGTCACGTGCGTCAAGAACTTCCCGGAGAGCCGCGGCGTCGTTTTGGGGATGTTGAAAGGCTACGTCGGCTTGAGCGGCGCAATCATCACCCAGCTCTA CCACGGCTTATACGGCGACGATTCCAAGTCGTTGATTCTCCTCATCGCCTGGCTCCCCGCCGCCATTTCCTTCGCCTTTTTAAGGACGATTCGAGTCATG AAGGTGATCCGGCAGCCGAACGAGATCAAAGTTTTCTACAATTTCCTTTACATATCCCTCGGCCTTGCCGGATTTCTTATGCTGCTTATAATCCTCGAGA AGAAATTTACTTTCAATCGGAGCGAGTACGGTGGAAGCGCTGGTATGGTTCTCGTTTTGCTCTTCCTCCCCCTCGTTGTCTCCTTTATCGAGGAGTACAA ACTATGGAGGAACAAAATGGTCATTCCAGAACACTCTCAACCCGTACCCATACCGATACCAGTCCACCAAATTAACCACGACATCGGCCACAAAAATAGT GACCGATCTTGCTGGAAGACGGTGTTCCAGCCTCCGAGTAGAGGGGACGATTTCACCATCTTGCAAGCGCTTTTTAGTGTAGACATGTTGGTGCTCTTCC TCGCCACGATTTGCGGTGTCGGAGGGACTCTGACGGCGATCGACAATTTGGGCCAGATCGGGACGTCGTTCGGGTACCCGAAGCGGAGCATCAGCACTTT TGTTTCCTTAGTGAGCATATGGAATTACTTGGGCCGGGTCGCCTCGGGTTTCCTTTCGGAGTATTTTTTAACCAAATACAAGTTTCCGCGCCCGTTGATG TTCACTTTAATCCTCCTCTTCTCCTGTGCGGGCCACCTATTGATCGCGTTCAACGTCCCCGGCGGGCTTTACGCAGCATCGATTATCATCGGGTTCAGCT TCGGGGCGCAGTGGCCGCTTCTGTTCGCCATCATTTCGGAGATATTCGGGCTCAAGTACTATTCCACGCTCTACAATTTCGGGTCGGTTGCCAGCCCGAT CGGGGTGTACTTGCTCAATGTCCGGGTCGCGGGATATTTATACGACAAGGAGGGGGAGAAGCAACTGGCGGCAATGGGTCTGGAGCGGAAACCGGGTCAG GACCTCAACTGCGTGGGGACAGAGTGCTACAAACTGGCGTTCTTTATAATTACAGCGGTTACTCTGTTTGGGACTATGGTGTCGCTGATTTTGGTGATTA GGACTAGGAAGTTTTACCGGGGAGATATTTATAAGAGGTTCCGGGAGGCGGAGCAGGAAATAACGGTGGGGGGCGGGAATGTGGGAAGGCGGGAAATGAC AACAGAGGAAAAGGATGGGAAAACCAAAGATATTGCGAGGGCTGATTAG
AA sequence Show only first row Show all	>Lus10037948 pacid=23163928 polypeptide=Lus10037948 locus=Lus10037948.g ID=Lus10037948.BGIv1.0 annot-version=v1.0 MTTAAPGGLAVHIVTGRWFMVFACFLIMSAAGATYMFGLYSGDIKTSLGYDQTTLNLLSFFKDLGGNVGVLSGLIAEVTPTWFVLTIGAVLNFFGYFMIW LAVTKKINAVKVWHMCLYICIGANSQAFANTGALVTCVKNFPESRGVVLGMLKGYVGLSGAIITQLYHGLYGDDSKSLILLIAWLPAAISFAFLRTIRVM KVIRQPNEIKVFYNFLYISLGLAGFLMLLIILEKKFTFNRSEYGGSAGMVLVLLFLPLVVSFIEEYKLWRNKMVIPEHSQPVPIPIPVHQINHDIGHKNS DRSCWKTVFQPPSRGDDFTILQALFSVDMLVLFLATICGVGGTLTAIDNLGQIGTSFGYPKRSISTFVSLVSIWNYLGRVASGFLSEYFLTKYKFPRPLM FTLILLFSCAGHLLIAFNVPGGLYAASIIIGFSFGAQWPLLFAIISEIFGLKYYSTLYNFGSVASPIGVYLLNVRVAGYLYDKEGEKQLAAMGLERKPGQ DLNCVGTECYKLAFFIITAVTLFGTMVSLILVIRTRKFYRGDIYKRFREAEQEITVGGGNVGRREMTTEEKDGKTKDIARAD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10037948 [exp]	0	1
AT5G24530		DMR6	DOWNY MILDEW RESISTANT 6, 2-ox...		Lus10015573 [exp]	5.7	0.7368
AT1G60010			unknown protein		Lus10030651 [exp]	9.7	0.7618
AT4G36470			S-adenosyl-L-methionine-depend...		Lus10041776 [exp]	11.9	0.7415
AT1G62280		SLAH1	SLAC1 homologue 1 (.1)		Lus10031545 [exp]	14.4	0.7102
AT5G24550		BGLU32	beta glucosidase 32 (.1)		Lus10030577 [exp]	17.1	0.6895
AT3G16030		CES101	CALLUS EXPRESSION OF RBCS 101,...		Lus10025784 [exp]	33.8	0.6948
AT4G17250			unknown protein		Lus10008508 [exp]	35.1	0.7359
AT5G43280		ATDCI1	"delta\(3,5\),delta\(2,4\)-die...		Lus10002583 [exp]	35.9	0.7363
AT5G63180			Pectin lyase-like superfamily ...		Lus10022310 [exp]	37.5	0.6542
AT4G37420			Domain of unknown function (DU...		Lus10016022 [exp]	40.4	0.7030

Compare expression of checked genes

Lus10037948 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.