Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39210 738 / 0 Major facilitator superfamily protein (.1) AT2G28120 633 / 0 Major facilitator superfamily protein (.1) AT1G74780 281 / 4e-87 Nodulin-like / Major Facilitator Superfamily protein (.1) AT5G14120 280 / 3e-86 Major facilitator superfamily protein (.1) AT3G01930 273 / 9e-84 Major facilitator superfamily protein (.1.2) AT5G50520 272 / 1e-83 Major facilitator superfamily protein (.1) AT5G50630 272 / 1e-83 Major facilitator superfamily protein (.1) AT1G18940 265 / 3e-81 Nodulin-like / Major Facilitator Superfamily protein (.1) AT2G34355 257 / 2e-78 Major facilitator superfamily protein (.1) AT2G34350 253 / 1e-76 Nodulin-like / Major Facilitator Superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038682 [exp] 899 / 0 AT2G39210 829 / 0.0 Major facilitator superfamily protein (.1) Lus10037948 [exp] 893 / 0 AT2G39210 839 / 0.0 Major facilitator superfamily protein (.1) Lus10014640 [exp] 654 / 0 AT2G39210 728 / 0.0 Major facilitator superfamily protein (.1) Lus10033790 [exp] 649 / 0 AT2G39210 734 / 0.0 Major facilitator superfamily protein (.1) Lus10022614 [exp] 553 / 0 AT2G39210 652 / 0.0 Major facilitator superfamily protein (.1) Lus10021513 [exp] 496 / 5e-171 AT2G39210 587 / 0.0 Major facilitator superfamily protein (.1) Lus10042170 [exp] 294 / 4e-92 AT1G74780 566 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Lus10035203 [exp] 274 / 8e-84 AT3G01930 876 / 0.0 Major facilitator superfamily protein (.1.2) Lus10032034 [exp] 273 / 2e-83 AT3G01930 874 / 0.0 Major facilitator superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G032901 [exp] 749 / 0 AT2G39210 830 / 0.0 Major facilitator superfamily protein (.1) Potri.006G122400 [exp] 692 / 0 AT2G39210 767 / 0.0 Major facilitator superfamily protein (.1) Potri.002G133900 [exp] 612 / 0 AT2G39210 666 / 0.0 Major facilitator superfamily protein (.1) Potri.004G215600 [exp] 606 / 0 AT2G28120 810 / 0.0 Major facilitator superfamily protein (.1) Potri.009G006400 [exp] 595 / 0 AT2G28120 845 / 0.0 Major facilitator superfamily protein (.1) Potri.001G329100 [exp] 286 / 2e-88 AT3G01930 869 / 0.0 Major facilitator superfamily protein (.1.2) Potri.017G064201 [exp] 275 / 3e-84 AT3G01930 805 / 0.0 Major facilitator superfamily protein (.1.2) Potri.012G098900 [exp] 272 / 3e-83 AT5G14120 681 / 0.0 Major facilitator superfamily protein (.1) Potri.015G067000 [exp] 271 / 5e-83 AT1G74780 562 / 0.0 Nodulin-like / Major Facilitator Superfamily protein (.1) Potri.001G194500 [exp] 253 / 1e-80 AT2G28120 377 / 9e-130 Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [flax] [poplar] MFS PF07690 [flax] [poplar] MFS_1 Major Facilitator Superfamily CL0015 [flax] [poplar] MFS PF06813 [flax] [poplar] Nodulin-like Nodulin-like
Representative CDS sequence Show only first row Show all	>Lus10037949 pacid=23163832 polypeptide=Lus10037949 locus=Lus10037949.g ID=Lus10037949.BGIv1.0 annot-version=v1.0 ATGACCACGGCAGCCCCCGTCGGCAAAATGATGAGCCTGTCCGTCCATATAATCTCCGGACGGTGGTTCATGGTGTTCGCCTGCTTCCTTATCATGTCCG TCTCCGGCGCCACATACCTTTTCGGTCTCTACTCCACCGACATCAAAACCTCCCTTGGCTACGACCAAAGAACCTTAAACCTCCTCAGCTTCTTCAAAGA CCTTGGATCCAACGTCGGCGTCCACGCCGGCCTAATCAACGAGGTCACCCCACCTTGGGTCGTCCTCTCATTCGGCGCCGTACTAAACTTCTTCGGATAC TTCATGATCTGGCTAGCCGTCACAAAAAAAATCACCTCCGTCAAAGTATGGCAGATGTGCCTCTACATCTGCATCGGCGCCAACTCCCAGGCCTTCGCCA ACAACGGAGCCTTGGTCACGTGCGTCAAGAACTTCCCGGAGAGCCGCGGCGTCGTTTTGGGGGTCTTGAAAGGCTACGTCGGCTTGTGCGGCGCGATCAT CACCCAGCTCTACTACGGGTTCTACGGCGACGATTCCACGTCGTTGATTCTCCTCATCGCTTGGCTCCCCGCCGCCATTTCTTTCGCCTTTTTAAGGACG ATGCGACTCATGAAGGTCGTCCGGCAGCCGAATGAAGTCAAAGTTTTCTACAACTTCCTCTACATATCCCTCGGCCTTGCTGGATTCCTCATGCTGATTA TAATCCTCGAGAAGAAATTTACTTTCAATCGGAGCGAGTACGGTGGAAGCGCTGCCATGGTTCTCGTTTTGCTCTTCCTTCCTCTCGTCGTCTCCTCTAT CGAAGAGTACAAAGTATGGAGGGACAAAGTGGTCATTCCGAATCACTCTCAATCCGAACCCACACCCATACCTGACCTGGTCAAACCCGTACCGGTCTAC GAAATTGACCACGAGATCGGCCACAAAAATAGTGGCCGATCTTGCTGGAAGACGGTATTCCAACCACCAAGTAGAGGGGACGATTTCACAATCTTACAAG CGCTTTTTAGTCTTGACATGCTGGTTCTCTTCCTCGCCACGATCCTCAGCGTGGGAGGGACATTGACGGCGATCGATAATTTGGGCCAAATTGGGACGTC GCTCGGGTACCCGAAGCGGAGCACGAGTACATTCATTTCCTTGGTAAGCATATGGAATTACCTGGGTCGGGTCGCATCGGGTTTCCTTTCGGAGCATTTC TTAAACAAGTACAAGTTTCCACGCCCGTTGATGTTCACTTTGATCATTCTATTTCCCTGTGTGGGCCACTTATTGATCGCGTTCAACCTCTCCGGGGGGC TCTACGCAGCATCGATTATCATCGGGTTTTGCTTCGGGGCGCAATGGCCGCTTCTATCCGCCATTATTTCGGAGATATTCGGACTGAAGTACTATGCCAC ACTTTATAATTTTGGATCGCTTGCTAGCCCAATCGGGGTGTACTTGCTTAATGTCCGGGTTGCGGGCTATTTATACGACAAGGAAGCGAATAAGCAGCTG GTGGCCATGGGTTTGGACCGCAAACCAGGTCAGGACTTGAGCTGTGTGGGGACAGAGTGTTATAAACTCACATTCGTTATAATTACGGCGACAACTTTGC TTGGGGCGTTTATATCCCTTGTTCTGGTGATAAGGACTAGAAATTTTTATCGGGGAGATATTTATAAGAAGTTCCGGGAACCGAAGCAAGAAATGATGGC GATCGCCGAGCAATCTCTCGTACAATCCTCCGATGACCAATCCACAACCCTGCACCATACTACCCCCATAACACCGCCTTCTCTAAACATATCCTCCACG CCTCCCCTCACCACTCGAGTACCATAG
AA sequence Show only first row Show all	>Lus10037949 pacid=23163832 polypeptide=Lus10037949 locus=Lus10037949.g ID=Lus10037949.BGIv1.0 annot-version=v1.0 MTTAAPVGKMMSLSVHIISGRWFMVFACFLIMSVSGATYLFGLYSTDIKTSLGYDQRTLNLLSFFKDLGSNVGVHAGLINEVTPPWVVLSFGAVLNFFGY FMIWLAVTKKITSVKVWQMCLYICIGANSQAFANNGALVTCVKNFPESRGVVLGVLKGYVGLCGAIITQLYYGFYGDDSTSLILLIAWLPAAISFAFLRT MRLMKVVRQPNEVKVFYNFLYISLGLAGFLMLIIILEKKFTFNRSEYGGSAAMVLVLLFLPLVVSSIEEYKVWRDKVVIPNHSQSEPTPIPDLVKPVPVY EIDHEIGHKNSGRSCWKTVFQPPSRGDDFTILQALFSLDMLVLFLATILSVGGTLTAIDNLGQIGTSLGYPKRSTSTFISLVSIWNYLGRVASGFLSEHF LNKYKFPRPLMFTLIILFPCVGHLLIAFNLSGGLYAASIIIGFCFGAQWPLLSAIISEIFGLKYYATLYNFGSLASPIGVYLLNVRVAGYLYDKEANKQL VAMGLDRKPGQDLSCVGTECYKLTFVIITATTLLGAFISLVLVIRTRNFYRGDIYKKFREPKQEMMAIAEQSLVQSSDDQSTTLHHTTPITPPSLNISST PPLTTRVP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39210			Major facilitator superfamily ...		Lus10037949 [exp]	0	1
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Lus10039672 [exp]	1.4	0.7537
AT1G80450			VQ motif-containing protein (....		Lus10026897 [exp]	2.4	0.6832
					Lus10002396 [exp]	2.4	0.7379
AT1G68320	MYB	BW62C, BW62B, A...	myb domain protein 62 (.1)		Lus10034338 [exp]	3.0	0.7141
AT1G68040			S-adenosyl-L-methionine-depend...		Lus10007950 [exp]	17.7	0.6810
AT1G32640	bHLH	JIN1, JAI1, ZBF...	JASMONATE INSENSITIVE 1, Basic...		Lus10030970 [exp]	20.1	0.6948
AT4G16480		ATINT4	inositol transporter 4 (.1)		Lus10038808 [exp]	29.9	0.6433
AT2G03380			Pentatricopeptide repeat (PPR)...		Lus10030418 [exp]	33.5	0.6462
AT2G40300		ATFER4	ferritin 4 (.1)		Lus10007523 [exp]	36.2	0.6798
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10008524 [exp]	36.4	0.6265

Compare expression of checked genes

Lus10037949 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.