Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04280 144 / 8e-41 AtRZ-1c AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT1G60650 119 / 1e-31 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G26420 84 / 1e-18 ATRZ-1A RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) AT4G39260 62 / 3e-12 ATGRP8, CCR1, GR-RBP8 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) AT2G21660 59 / 2e-10 CCR2, ATGRP7, GR-RBP7 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) AT5G61030 54 / 4e-08 GR-RBP3 glycine-rich RNA-binding protein 3 (.1) AT4G13850 50 / 8e-08 ATGRP2, GR-RBP2 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) AT4G24770 51 / 5e-07 CP31, ATRBP33, ATRBP31, RBP31 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) AT1G60000 50 / 6e-07 RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G23830 48 / 6e-07 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038683 [exp] 327 / 9e-113 AT5G04280 179 / 8e-55 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10000128 [exp] 219 / 2e-71 AT5G04280 144 / 2e-42 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10020953 [exp] 66 / 3e-12 AT3G26420 170 / 1e-52 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Lus10042320 [exp] 59 / 3e-10 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026344 [exp] 59 / 3e-10 AT2G21660 140 / 3e-44 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10023569 [exp] 56 / 2e-09 AT2G21660 147 / 8e-46 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10026343 [exp] 56 / 3e-09 AT4G39260 145 / 1e-45 glycine-rich RNA-binding protein 8, GLYCINE-RICH PROTEIN 8, cold, circadian rhythm, and RNA binding 1 (.1.2.3.4) Lus10040454 [exp] 56 / 8e-09 AT2G21660 148 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Lus10016639 [exp] 52 / 6e-08 AT4G13850 166 / 1e-53 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228700 [exp] 188 / 3e-58 AT5G04280 172 / 7e-52 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.008G033000 [exp] 185 / 8e-57 AT1G60650 172 / 3e-52 AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Potri.001G207100 [exp] 77 / 1e-16 AT3G26420 175 / 7e-55 RZ-1A, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.004G155300 [exp] 56 / 3e-09 AT2G21660 145 / 3e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.009G116400 [exp] 55 / 7e-09 AT2G21660 145 / 5e-45 GLYCINE-RICH RNA-BINDING PROTEIN 7, "cold, circadian rhythm, and rna binding 2", GLYCINE RICH PROTEIN 7, cold, circadian rhythm, and rna binding 2 (.1.2) Potri.017G059000 [exp] 51 / 8e-08 AT4G13850 134 / 9e-42 glycine rich protein 2, glycine-rich RNA-binding protein 2 (.1.2.3.4) Potri.016G090700 [exp] 52 / 2e-07 AT2G37220 302 / 4e-103 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.015G057400 [exp] 52 / 2e-07 AT5G61030 157 / 8e-47 glycine-rich RNA-binding protein 3 (.1) Potri.001G340800 [exp] 49 / 1e-06 AT4G24770 322 / 2e-110 ARABIDOPSIS THALIANA RNA BINDING PROTEIN, APPROXIMATELY 31 KD, 31-kDa RNA binding protein (.1) Potri.012G061600 [exp] 49 / 1e-06 AT5G61030 181 / 9e-56 glycine-rich RNA-binding protein 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10037950 pacid=23163851 polypeptide=Lus10037950 locus=Lus10037950.g ID=Lus10037950.BGIv1.0 annot-version=v1.0 ATGATGTTCAAAGGATGCAAACTGGCTCGTGTCCCGTGGGTGCTTGTTGATGGGTTTTCAGTTGTTTTTTGTTTGGTTTTACATGTCCTCTACATGCCAA AGAAGTTCCTTCCTCATGTTGCTGTTGTAGGAATTATTCCAGGAAGAAGTTCAGATGCCTTATTGGATCTATCAGACACACTCAAAATCATGGTGGAAAG AGATACAGGACGATCCCGTGGGTTTGGATTTATCACGTACTCTGATCGGCAGGGAATGGAAGAAGCAATTCGTGTGATGCATGGCCGGGAGCTTGCTGAT CGTGTAATTTCTGTGAACAAGGCCCAACCTAAAATAGGTGATGACATAGAACCGAGCTACCTGGGAGGCTACTCTGACAATCGCTATAGGGGAGGCTTTC AATCAAGTGGCAGGGGACGCTATGGGGGAGGAGACAGGCCTGTTGGCCAGGATGAGTGCTACAAATGTGGCCGTCCTGGGCATTGGGCTCGGGACTGCCC AACATCAGGTGGACGAGGAAGCGGAGGTGCTTTCCCTCCACGATCTGGGTTTGGTGGCCCTGCTGATCGTGGAGATCACTTTAGAGGAGATCGTGATCGC TACCTAGATGATCGCTATGATGGAGGACGATATATGGATAGAGATCGCTTTGAGAGTAGAGACAAATATGTGCCTCGTGATCGCTTTGCCAATGACAGGT ACCCTCCAGCTGGTGACCGCATTATAGGCGACAGGTACAGTGGCTTTGATCGCTTTGGTCCGAGTGGTTATGACAGAGACAGAAGCTACGAGAGGGATGG AGGGATGCGAGGGGCTGGCGATAGATATGCGAGTGGAGGACCAGCTCGAAGAGACAGGAGCTACAGGGATAGAGCAGCAGCTCCTTTCGAGCGCCCAAGC AGCAGAGGAGGGCGTAACTTGGACCGCTGCTGA
AA sequence Show only first row Show all	>Lus10037950 pacid=23163851 polypeptide=Lus10037950 locus=Lus10037950.g ID=Lus10037950.BGIv1.0 annot-version=v1.0 MMFKGCKLARVPWVLVDGFSVVFCLVLHVLYMPKKFLPHVAVVGIIPGRSSDALLDLSDTLKIMVERDTGRSRGFGFITYSDRQGMEEAIRVMHGRELAD RVISVNKAQPKIGDDIEPSYLGGYSDNRYRGGFQSSGRGRYGGGDRPVGQDECYKCGRPGHWARDCPTSGGRGSGGAFPPRSGFGGPADRGDHFRGDRDR YLDDRYDGGRYMDRDRFESRDKYVPRDRFANDRYPPAGDRIIGDRYSGFDRFGPSGYDRDRSYERDGGMRGAGDRYASGGPARRDRSYRDRAAAPFERPS SRGGRNLDRC

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10037950 [exp]	0	1
AT5G04280		AtRZ-1c	AtRZ-1c, RNA-binding (RRM/RBD/...		Lus10038683 [exp]	1.0	0.9189
AT5G19490	CCAAT		Histone superfamily protein (....		Lus10026780 [exp]	1.4	0.8936
AT5G55160		ATSUMO2, SUMO2,...	small ubiquitin-like modifier ...		Lus10032560 [exp]	1.7	0.8754
AT3G22660			rRNA processing protein-relate...		Lus10036936 [exp]	3.9	0.8490
AT1G50300		TAF15	TBP-associated factor 15 (.1)		Lus10012902 [exp]	4.9	0.8240
AT3G24490	Trihelix		Alcohol dehydrogenase transcri...		Lus10017725 [exp]	6.0	0.8545
AT5G11500			unknown protein		Lus10038625 [exp]	8.8	0.8479
					Lus10024538 [exp]	10.6	0.8256
AT5G17900			microfibrillar-associated prot...		Lus10005672 [exp]	11.6	0.8148
AT2G02880			mucin-related (.1)		Lus10030486 [exp]	14.5	0.7886

Compare expression of checked genes

Lus10037950 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.