Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54940 442 / 2e-153 Papain family cysteine protease (.2) AT2G21430 367 / 5e-124 Papain family cysteine protease (.1) AT4G39090 357 / 5e-120 EMB3005, RD19A, RD19 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) AT4G16190 334 / 9e-111 Papain family cysteine protease (.1) AT5G43060 189 / 5e-54 Granulin repeat cysteine protease family protein (.1) AT4G35350 184 / 2e-53 XCP1 xylem cysteine peptidase 1 (.1.2) AT4G36880 184 / 3e-53 CP1 cysteine proteinase1 (.1) AT5G60360 184 / 4e-53 SAG2, AALP SENESCENCE ASSOCIATED GENE2, aleurain-like protease (.1.2.3) AT3G19400 182 / 2e-52 Cysteine proteinases superfamily protein (.1.2) AT1G47128 184 / 3e-52 RD21A, RD21 RESPONSIVE TO DEHYDRATION 21A, responsive to dehydration 21, Granulin repeat cysteine protease family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038684 [exp] 642 / 0 AT3G54940 499 / 1e-177 Papain family cysteine protease (.2) Lus10024303 [exp] 373 / 4e-126 AT4G39090 520 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10028797 [exp] 344 / 1e-114 AT4G39090 559 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10017487 [exp] 339 / 4e-113 AT4G39090 550 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10002103 [exp] 321 / 5e-107 AT4G39090 431 / 5e-153 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10038686 [exp] 281 / 3e-84 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037954 [exp] 198 / 3e-59 AT3G47570 261 / 7e-84 Leucine-rich repeat protein kinase family protein (.1) Lus10017489 [exp] 185 / 1e-55 AT4G39090 314 / 5e-108 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Lus10033428 [exp] 185 / 2e-53 AT3G45310 565 / 0.0 Cysteine proteinases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G228400 [exp] 501 / 4e-176 AT3G54940 501 / 6e-179 Papain family cysteine protease (.2) Potri.004G160300 [exp] 363 / 4e-122 AT4G39090 549 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.005G234000 [exp] 362 / 7e-122 AT4G39090 501 / 9e-179 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.009G121300 [exp] 360 / 7e-121 AT4G39090 571 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.002G028700 [exp] 359 / 8e-121 AT4G39090 536 / 0.0 RESPONSIVE TO DEHYDRATION 19A, RESPONSIVE TO DEHYDRATION 19, Papain family cysteine protease (.1) Potri.007G047600 [exp] 194 / 5e-57 AT5G43060 461 / 9e-162 Granulin repeat cysteine protease family protein (.1) Potri.011G066900 [exp] 184 / 5e-52 AT1G09850 366 / 7e-123 xylem bark cysteine peptidase 3 (.1) Potri.005G256000 [exp] 180 / 7e-52 AT1G20850 539 / 0.0 xylem cysteine peptidase 2 (.1) Potri.005G141600 [exp] 179 / 3e-51 AT4G36880 437 / 1e-153 cysteine proteinase1 (.1) Potri.014G024100 [exp] 181 / 4e-51 AT5G43060 646 / 0.0 Granulin repeat cysteine protease family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0125 [flax] [poplar] Peptidase_CA PF00112 [flax] [poplar] Peptidase_C1 Papain family cysteine protease CL0125 [flax] [poplar] PF08246 [flax] [poplar] Inhibitor_I29 Cathepsin propeptide inhibitor domain (I29) CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037951 pacid=23163922 polypeptide=Lus10037951 locus=Lus10037951.g ID=Lus10037951.BGIv1.0 annot-version=v1.0 ATGATCCCGCAAATCATCCTGCTCCATCTACTCCTCTTCTCGAGCTCAGCATCGGCCACCACCGCAGTGCATCCGGAACAAGATGCCAACATATTCCAAG TGACGGACGACACTCTCAGCAACAACAGGAAATTCTTGAAAATCGGAATCGACCACCTGCTGGGAACGGAGGACAACTTCAAGCTGTTCGTTCAAAAGTA CAACAAGGAGTATTCCGACAGCGAAGAGTACGCCCGCCGCCTCCGTGTTTTCACCCGGAACTTGGTGAAAGCGGCCGAGCATCAGGCGATGGACCCCACT GCCATCCACGGGGTTACTCCTTTCATGGACTTGACCGAGGAGGAGTTCCAGAGGTTGTATACCGGGGTTTCGATGCCTCCCTCGATGATGGAGGGCAGAG CTGGCGAGGATGGTGTTTTTGTGGAGGAGGAGGAGGCGGAGACGATGGACACTAGCGGTTTGCCGGATGAGTTTGACTGGAGGGACAAAGGTGCTGTAAC GGACGTCAAGATGCAGGGGACTTGTGGGTCATGCTGGGCTTTTAGCACGACGGGAGCAGTGGAAGGAGCTCATTTCTTGTCAACGGGGAAGCTGGTCAAT CTCAGCGAACAGCAGCTCGTTGACTGTGATAACGTTTGCGACGAAAAGGAGAAGTCGGCTTGCGACAAAGGGTGCAATGGAGGGCTGATGACGAATGCGT ACAGGTACTTGATCAAGGCCGGTGGGCTACAAGACGAAGCTTCCTACCCTTACACTGGAAAGCCAGGGGAATGCCAGTTCGACCCCAACAAAATCGCAGT CAAAGTTGCCAATTTCTCAACCATTTCCCTCGACGAGAACCAAATCGCAGCACATCTCGTAAACCATGGACCCCTAGCAGTTGGGTTGAATGCTGTGTTC ATGCAAACATACATCGGGGGTGTGTCGTGCCCTCTTATATGCGGGAAGAAGTTTATAAACCATGGGGTTCTGCTGGTCGGGTATGGATCGAAAGGGTTCT CGCTTCTGAGGTTCGGATACAGGCCATACTGGATAATCAAGAACTCATGGGGGAAGCACTGGGGGGAGTCAGGGCTGAACATTGCTATCGATGTTGCTTA CGCAATTGAGTATCTTCACAATGATTGCGAGATTCCCATCATCCACTGCGATCTGAAACCGAGCAATATACTGCTGGACCATTTGATGACGGGTCAGGTC AGTGACTTTGGGTTGGCGAAGCTTGTCGGTAACATGAATCAATGGAGCTCGGTTGGAGTCAGGGGAACTGTCGGATATGCTCCTCCAGAATACGGGATGG GAAGCGAAATGTCAACTAAGGGAGACATGTGCAGCTACGGGATCCTATTGCTGGAGATGTTCACAGGGAAGAATCTGACTAACGAAATGTTCAAAGACGG GATGAGCCTTCACAACGTGGCAGCATCATCCAACTCTAAGCTTTGTTGCTTGATGGATGTAGTCGACCCGTCGATTCTCCTCAAGAAGGGGAAAGGTTCG GATGAAGATGAGCATGCGTCAGTAGTTTATAACGAGTACGATTCTGGAGATTGGAGTTTCCTGTTCAGCTGA
AA sequence Show only first row Show all	>Lus10037951 pacid=23163922 polypeptide=Lus10037951 locus=Lus10037951.g ID=Lus10037951.BGIv1.0 annot-version=v1.0 MIPQIILLHLLLFSSSASATTAVHPEQDANIFQVTDDTLSNNRKFLKIGIDHLLGTEDNFKLFVQKYNKEYSDSEEYARRLRVFTRNLVKAAEHQAMDPT AIHGVTPFMDLTEEEFQRLYTGVSMPPSMMEGRAGEDGVFVEEEEAETMDTSGLPDEFDWRDKGAVTDVKMQGTCGSCWAFSTTGAVEGAHFLSTGKLVN LSEQQLVDCDNVCDEKEKSACDKGCNGGLMTNAYRYLIKAGGLQDEASYPYTGKPGECQFDPNKIAVKVANFSTISLDENQIAAHLVNHGPLAVGLNAVF MQTYIGGVSCPLICGKKFINHGVLLVGYGSKGFSLLRFGYRPYWIIKNSWGKHWGESGLNIAIDVAYAIEYLHNDCEIPIIHCDLKPSNILLDHLMTGQV SDFGLAKLVGNMNQWSSVGVRGTVGYAPPEYGMGSEMSTKGDMCSYGILLLEMFTGKNLTNEMFKDGMSLHNVAASSNSKLCCLMDVVDPSILLKKGKGS DEDEHASVVYNEYDSGDWSFLFS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54940			Papain family cysteine proteas...		Lus10037951 [exp]	0	1
AT2G20030			RING/U-box superfamily protein...		Lus10000885 [exp]	6.2	0.7347
AT3G55210	NAC	ANAC063	NAC domain containing protein ...		Lus10031639 [exp]	10.9	0.7269
AT4G01310			Ribosomal L5P family protein (...		Lus10036391 [exp]	15.1	0.7171
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10028440 [exp]	18.0	0.6993
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	18.0	0.7084
					Lus10026713 [exp]	20.1	0.7060
AT1G72200			RING/U-box superfamily protein...		Lus10036466 [exp]	24.8	0.6822
AT4G13230			Late embryogenesis abundant pr...		Lus10011889 [exp]	25.9	0.6881
AT5G44440			FAD-binding Berberine family p...		Lus10010643 [exp]	28.5	0.6800
					Lus10021851 [exp]	33.6	0.6660

Compare expression of checked genes

Lus10037951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.