Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 131 / 3e-35 HXXXD-type acyl-transferase family protein (.1) AT4G15390 126 / 3e-33 HXXXD-type acyl-transferase family protein (.1) AT3G30280 116 / 1e-29 HXXXD-type acyl-transferase family protein (.1) AT3G26040 113 / 2e-28 HXXXD-type acyl-transferase family protein (.1) AT1G24420 110 / 3e-27 HXXXD-type acyl-transferase family protein (.1) AT5G23970 106 / 5e-26 HXXXD-type acyl-transferase family protein (.1) AT5G47950 102 / 2e-24 HXXXD-type acyl-transferase family protein (.1) AT5G47980 96 / 3e-22 HXXXD-type acyl-transferase family protein (.1) AT1G03390 75 / 6e-15 HXXXD-type acyl-transferase family protein (.1) AT5G41040 73 / 3e-14 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037956 [exp] 306 / 1e-102 AT1G24430 220 / 5e-67 HXXXD-type acyl-transferase family protein (.1) Lus10038689 [exp] 298 / 2e-99 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 282 / 5e-93 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 278 / 2e-91 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10036042 [exp] 163 / 1e-48 AT4G15390 151 / 1e-42 HXXXD-type acyl-transferase family protein (.1) Lus10005361 [exp] 166 / 4e-48 AT3G26040 213 / 9e-64 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 165 / 1e-47 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10026013 [exp] 164 / 2e-47 AT3G26040 194 / 5e-57 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 164 / 4e-47 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 254 / 5e-82 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 249 / 3e-80 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 249 / 3e-80 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 249 / 6e-80 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 158 / 4e-45 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 158 / 5e-45 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 157 / 7e-45 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 157 / 7e-45 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 152 / 5e-43 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 152 / 5e-43 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10037952 pacid=23163635 polypeptide=Lus10037952 locus=Lus10037952.g ID=Lus10037952.BGIv1.0 annot-version=v1.0 ATGGAGGTAAGAATCATTTCCACGGAGCTGGTGAAGCCATCTTCTCCTGAAATTATAAGAAACAAACCTCCCCACAAGCTCTGTCTCTTTGACCAGCTAA CCCCCTTGACCTACACCCCAATCATCCTCTTCTACGCCAATCCGCACTACCCCAATCTGCTCCACCACCTCAAGCGCTCCTTAGCAGACACTCTTAATGT CTACTACCCTTTCTCCGGCAGGTCCACCTCCCATTCCGATAGCAACAACCTGTTCATCGATAGGTTCAATGAAGGAGTCCCTTTCATCCATGTCCAGGCC AATTGCTGCCTTTCAGATTTCCTCAAACACCACCAACCGGCCGATTCCCTCAACCTTCTCCTCCCTCGCCAGCCTTTCCACAAAGAACCCACTACTGCCA TCTCCTCCTACCCTGTTTGGGAGCTTCAGATCTCTTTCTTCTCCTGCGGCGGATTTGCCTTGGGATTCGCATGCTCTCACAAACTAATCGACGCTTTCAC CTTCAAATCCTTCCTGGCCGTCTTCTCCGCGGTGTCTCGCGGCGGCAGAGAGGGTGAAATCGCTGTTAGCACAAATCTTGGTCAGGCGGCGGAGCTTTTC CCTCCCAGGGAAACGATCCCTAGGAATTTCATCCGCCTGATGGAAAATCTCTGGTTCACGGAAGGAAGCTACGTGACGAGGCGATTCATCTTCCGTTCCG GAGCAATAGCAAAGCTGAGAGTCATGGCTGCAGCGTCGGGGGAGGATGGAGTAGTAATCAAGCGGTCTAGAGTTGAGGCGGTGTCCTGTTTCATATGGGG AACTTCCCGAGCTGGCGAGTCGACTGAGCGAGGCGGTCGAGCTGTACAAGAGTGA
AA sequence Show only first row Show all	>Lus10037952 pacid=23163635 polypeptide=Lus10037952 locus=Lus10037952.g ID=Lus10037952.BGIv1.0 annot-version=v1.0 MEVRIISTELVKPSSPEIIRNKPPHKLCLFDQLTPLTYTPIILFYANPHYPNLLHHLKRSLADTLNVYYPFSGRSTSHSDSNNLFIDRFNEGVPFIHVQA NCCLSDFLKHHQPADSLNLLLPRQPFHKEPTTAISSYPVWELQISFFSCGGFALGFACSHKLIDAFTFKSFLAVFSAVSRGGREGEIAVSTNLGQAAELF PPRETIPRNFIRLMENLWFTEGSYVTRRFIFRSGAIAKLRVMAAASGEDGVVIKRSRVEAVSCFIWGTSRAGESTERGGRAVQE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037952 [exp]	0	1
AT2G22180			hydroxyproline-rich glycoprote...		Lus10000688 [exp]	3.0	1.0000
					Lus10000824 [exp]	4.2	1.0000
AT2G33470		ATGLTP1, GLTP1	ARABIDOPSIS GLYCOLIPID TRANSFE...		Lus10003626 [exp]	6.0	1.0000
					Lus10003272 [exp]	7.3	1.0000
					Lus10011629 [exp]	7.3	1.0000
AT5G26150			protein kinase family protein ...		Lus10024998 [exp]	9.0	1.0000
AT1G11040			HSP40/DnaJ peptide-binding pro...		Lus10025682 [exp]	9.5	1.0000
					Lus10010826 [exp]	9.5	1.0000
					Lus10029832 [exp]	10.4	1.0000
					Lus10022108 [exp]	11.2	1.0000

Compare expression of checked genes

Lus10037952 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.