Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G39390 251 / 3e-80 Leucine-rich repeat protein kinase family protein (.1) AT3G47570 260 / 1e-79 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 258 / 7e-79 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 256 / 2e-78 Leucine-rich repeat protein kinase family protein (.1) AT3G47110 253 / 7e-77 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 247 / 9e-75 EFR EF-TU receptor (.1) AT2G24130 165 / 7e-46 Leucine-rich receptor-like protein kinase family protein (.1) AT5G07280 158 / 3e-43 EXS, EMS1 EXTRA SPOROGENOUS CELLS, EXCESS MICROSPOROCYTES1, Leucine-rich repeat transmembrane protein kinase (.1) AT1G78530 144 / 2e-40 Protein kinase superfamily protein (.1) AT5G65710 147 / 1e-39 HSL2 HAESA-like 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038688 [exp] 372 / 3e-127 AT3G47110 273 / 2e-81 Leucine-rich repeat protein kinase family protein (.1) Lus10038686 [exp] 367 / 7e-120 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033329 [exp] 289 / 4e-90 AT3G47570 794 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 288 / 1e-89 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011388 [exp] 286 / 2e-89 AT3G47570 757 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10033330 [exp] 286 / 4e-89 AT3G47570 783 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 284 / 3e-88 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030854 [exp] 283 / 3e-88 AT3G47110 758 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011386 [exp] 284 / 2e-87 AT3G47570 787 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102700 [exp] 310 / 5e-98 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 300 / 2e-94 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.019G100901 [exp] 288 / 2e-94 AT5G39390 394 / 9e-133 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 291 / 5e-91 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 289 / 3e-90 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.006G273001 [exp] 285 / 7e-90 AT3G47570 635 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 286 / 4e-89 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102800 [exp] 283 / 5e-88 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.010G228200 [exp] 280 / 9e-87 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 280 / 1e-86 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF07714 [flax] [poplar] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Lus10037954 pacid=23163929 polypeptide=Lus10037954 locus=Lus10037954.g ID=Lus10037954.BGIv1.0 annot-version=v1.0 ATGGGTGTTGCGGTCAAAGTTCTCAACCTCATCCATCCAAGTGGTTACAAGAGCTTTGTTGCGGACTGTGAAGCGCTCAGAAATGCCAGGCACCGAAATT TAGTGAAGGTGGTGACAGTGTGCTCCAGCGTGGACCACCACGGGAATGATTTCAAAGCAATTGTGTATGAGTTTATGGAGAATGGGAGCTTGGATGATTG GTTGCATAACAAGAGGGGTACTAGTAGTACTAGTACTAGCACTAGTTCGTTGAATATGATACAGAGACTGAATATTGGTATTGATGTTGGATCGGCAGTA GAGTATCTTCACAACGATTGTGAAACTCCAATTATACACTGCGACCTGAAACCGAGCAATATTCTGTTGGATCATCAGATGACGGGTCGGGTGAGTGACT TGGGGCTGGCAAAGCTTGTTGCGGCTGCAGAAGGATGTGGGTCGTCTGCAAAAGAATGGAGCTCTGTTGCGGTAAGAGGAACTGTTGGCTATGCTCCTCC AGAATATGGGACTGGAGGCGAGATATCGAGTAAGGGAGACGTGTATAGCTACGGGATCCTGTTGTTAGAGATGTTCACCGGAAAGAGTCCAACTGATGAA ATGTTCAAAGACGGGCTGAGCCTCCGCGGCTTAGTGGCTTCTAAGCTTGCTTGCCCGGACAGTGTAGTTGATCCATCAGTCCTGGAACTGGTAAACAATA ATAGTGAGGAGAATCAGACTTCAGATGTTTATAAAGAGTGTTTGGGTTCAATTCTGAGGATTGGAGTGGCTTGTTCAGTGGAAATGCCTTCTGACCGACC TGGGATAAGTAGCATTGTAAAGGAACTCTGTCAAATTAGGGAAAGATTGCTGCTGGGAGGTGTTGAGACAAATAGACGTCGACGTATGTATTACCATTAA
AA sequence Show only first row Show all	>Lus10037954 pacid=23163929 polypeptide=Lus10037954 locus=Lus10037954.g ID=Lus10037954.BGIv1.0 annot-version=v1.0 MGVAVKVLNLIHPSGYKSFVADCEALRNARHRNLVKVVTVCSSVDHHGNDFKAIVYEFMENGSLDDWLHNKRGTSSTSTSTSSLNMIQRLNIGIDVGSAV EYLHNDCETPIIHCDLKPSNILLDHQMTGRVSDLGLAKLVAAAEGCGSSAKEWSSVAVRGTVGYAPPEYGTGGEISSKGDVYSYGILLLEMFTGKSPTDE MFKDGLSLRGLVASKLACPDSVVDPSVLELVNNNSEENQTSDVYKECLGSILRIGVACSVEMPSDRPGISSIVKELCQIRERLLLGGVETNRRRRMYYH

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10037954 [exp]	0	1

Compare expression of checked genes

Lus10037954 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.