Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G47570 393 / 1e-124 Leucine-rich repeat protein kinase family protein (.1) AT3G47580 359 / 1e-111 Leucine-rich repeat protein kinase family protein (.1) AT3G47090 352 / 3e-109 Leucine-rich repeat protein kinase family protein (.1) AT5G20480 348 / 2e-107 EFR EF-TU receptor (.1) AT3G47110 337 / 4e-103 Leucine-rich repeat protein kinase family protein (.1) AT5G46330 289 / 8e-85 FLS2 FLAGELLIN-SENSITIVE 2, Leucine-rich receptor-like protein kinase family protein (.1) AT2G25790 241 / 1e-68 Leucine-rich receptor-like protein kinase family protein (.1) AT2G33170 239 / 3e-67 Leucine-rich repeat receptor-like protein kinase family protein (.1) AT5G44700 239 / 4e-67 GSO2, EDA23 GASSHO 2, EMBRYO SAC DEVELOPMENT ARREST 23, Leucine-rich repeat transmembrane protein kinase (.1) AT3G49670 236 / 1e-66 BAM2 BARELY ANY MERISTEM 2, Leucine-rich receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038686 [exp] 837 / 0 AT3G47570 752 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10037840 [exp] 486 / 1e-159 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10004388 [exp] 493 / 6e-159 AT3G47570 815 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030903 [exp] 472 / 2e-154 AT3G47570 798 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10032306 [exp] 463 / 7e-151 AT3G47570 792 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011387 [exp] 462 / 1e-150 AT3G47570 782 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030845 [exp] 461 / 2e-150 AT3G47570 796 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030587 [exp] 460 / 6e-150 AT3G47570 776 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10030855 [exp] 454 / 1e-147 AT3G47570 790 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G102800 [exp] 550 / 0 AT3G47570 862 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G103000 [exp] 550 / 0 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102700 [exp] 541 / 0 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.011G102900 [exp] 540 / 0 AT3G47570 843 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G034000 [exp] 489 / 4e-161 AT3G47570 827 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.008G007866 [exp] 482 / 6e-159 AT3G47570 770 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.013G133100 [exp] 483 / 1e-158 AT3G47570 761 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.005G080000 [exp] 483 / 1e-158 AT3G47570 818 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G115900 [exp] 481 / 3e-158 AT3G47570 810 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Potri.017G151400 [exp] 480 / 8e-158 AT3G47570 763 / 0.0 Leucine-rich repeat protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0022 [flax] [poplar] LRR PF00560 [flax] [poplar] LRR_1 Leucine Rich Repeat CL0022 [flax] [poplar] PF08263 [flax] [poplar] LRRNT_2 Leucine rich repeat N-terminal domain
Representative CDS sequence Show only first row Show all	>Lus10037955 pacid=23163704 polypeptide=Lus10037955 locus=Lus10037955.g ID=Lus10037955.BGIv1.0 annot-version=v1.0 ATGGAGCTTCCCACTCTCTCCATCATCTATCTCACTACTGTCATCTTCATCTCACAATTCCTTCCTATGTCAGCAGCAGTTGATGGAAACAGAACCGACC AACTAGCTCTAACAGCTTTCAAGTCCCAAATAACCCACGACCCACTTCAAATCACAGCTTCCTGGAACTCCACCACCCATTTCTGCAACTGGCCTGGAAT CACCTGCGGCCGTAAGCACCATAGAGTAACTGTTCTCGACCTCCGTTCCTCCCAACTCTCAGGTTCAATCTCCCCTCCCATTGGCAACCTCAGCTTTCTT AGGAAGATTTACCTCCAAAACAGCAGCCTCAGTGGCCAAATCCCGCCGGAGATCGTTCGTCTGAGCAGACTTGAATTCATCACCCTCCGCAACAACTCCC TTGCAGGTGAAATCCCACCCGGCCTATTCAACTGTTCCAACCTTGCTTTCTTTACCTTTGCAGGGAACATCCTGTCAGGAAAAATTCCTGACGAGATCGG GTCTCTTTCGAAGCTGAAAAGGATCGGACTTGGCAACAACAGCTTGACGGGAAGTATACCGCAATCTGTAGGGAACATGTCTTCTCTTGAGGAAATTTAT GCCTACAGGAATCATCTTGTGGGTAATCTCCCTGTTGGTCTAGGCCGATCGAGGAACTTCTCTCTCGTGTCTCTCTATGATAATAGCTTGTCAGGAACTA TTCCTGATTCAACTTTGAACAGCTCCACTTTAGTGGAAATGGATCTCGAATTGAACCACTTCACCGGACAGCTTCCGCCGGGATTGGGTTTAACATTTCT TCCACAACTTGAGTACATTTCCTTGCGTAGTAATCACTTCTCTGGGCAGATTCCAGCTTCATTATCAAACGCCACAAACTTGGGGACCATTCGATTGGGG TTGAATTGGTTTGCAGGAAGATTTCCTTCTCTCGAAAGATTGAAGGGGCTTCAATTGCTGGCGATCAACTCCAACAATCTGGGAACTGGAATGGAGGGTG ACTTAGACTTCCTTGTTAGTTTGACTAACAATACTTTGCTAGAGACCCTCGCTCTGGATCATAATAATTTCGGAGGACGGCTTCCGAAACAAATTGGGAA TCTTTCGAGGAGGTTGACTTCAATGTCGATGAGCAACAATCAACTGTACGGAGAGATTCCGCGTGGGATTGAGAATCTGATCAATATGAGGCAATTCGAG GCTCATAACAATAATATTTCAGGTATTATTCCTTCAGATTTGGGAAAGCTTCAAAATTTAGAAGGACTAAACCTAGGAAACAACCGACTATCGGGATTTA TTCCAACTTCGTTGGGAAATTTGACACGGTTGGTTGAACTTCATCTCGAGACAAATCATCTCTGCGGAACGATTTCAAATGTTCTAGGGAACTGCAAGAG GTTATTAGCATTGAACATTTCTCAAAAATCTCTTCGAGGTTCTATACCCATTGAACTTCTTCTCCTCGCTTCCTTATCAATATTCCTAGACTTGTCCCAA AATCGGTTGTCGGGTTCCATTCCTGTCGAAATTGGAAACCTGAAGAACCTAGGATTGCTACGACTTTCTCAGAACATGCTGTCAGGAAAGATTCCAAACA GTCTTGGAAGTTGCATAATGTTAGAGGCACTATACATCGATTCGAACAATTTCAGTGGCCCAATCCCTCAATCTCTAAGCTCATTAAGAGGCATCCGATG GTTAAATGTTTCGCGAAACAATCTCTCGGGTCAGATTCCGGACTTCTTCCAGAATTTCAGTTCATTGGAGTCCCTTGATTTGTCGTACAACAATTTCCAA GGGATGATACCAAGCCAAGGCATTTTCAAGAACCCAAATTCAACTCTGATTTTTGGAAACGTAAATCTCTGCGGTGGCATTCCAGGTTTCGGGCTGCGAA AATGCAAGCAAGACCCATCTTCAGGAAAATTAAACAATCATCTGAACTGA
AA sequence Show only first row Show all	>Lus10037955 pacid=23163704 polypeptide=Lus10037955 locus=Lus10037955.g ID=Lus10037955.BGIv1.0 annot-version=v1.0 MELPTLSIIYLTTVIFISQFLPMSAAVDGNRTDQLALTAFKSQITHDPLQITASWNSTTHFCNWPGITCGRKHHRVTVLDLRSSQLSGSISPPIGNLSFL RKIYLQNSSLSGQIPPEIVRLSRLEFITLRNNSLAGEIPPGLFNCSNLAFFTFAGNILSGKIPDEIGSLSKLKRIGLGNNSLTGSIPQSVGNMSSLEEIY AYRNHLVGNLPVGLGRSRNFSLVSLYDNSLSGTIPDSTLNSSTLVEMDLELNHFTGQLPPGLGLTFLPQLEYISLRSNHFSGQIPASLSNATNLGTIRLG LNWFAGRFPSLERLKGLQLLAINSNNLGTGMEGDLDFLVSLTNNTLLETLALDHNNFGGRLPKQIGNLSRRLTSMSMSNNQLYGEIPRGIENLINMRQFE AHNNNISGIIPSDLGKLQNLEGLNLGNNRLSGFIPTSLGNLTRLVELHLETNHLCGTISNVLGNCKRLLALNISQKSLRGSIPIELLLLASLSIFLDLSQ NRLSGSIPVEIGNLKNLGLLRLSQNMLSGKIPNSLGSCIMLEALYIDSNNFSGPIPQSLSSLRGIRWLNVSRNNLSGQIPDFFQNFSSLESLDLSYNNFQ GMIPSQGIFKNPNSTLIFGNVNLCGGIPGFGLRKCKQDPSSGKLNNHLN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G47570			Leucine-rich repeat protein ki...		Lus10037955 [exp]	0	1
AT1G29140			Pollen Ole e 1 allergen and ex...		Lus10042838 [exp]	2.0	0.7190
AT5G61730		ABCA9, ATATH11	ARABIDOPSIS THALIANA ABC2 HOMO...		Lus10042172 [exp]	6.0	0.6740
					Lus10028050 [exp]	6.4	0.7992
					Lus10017557 [exp]	19.3	0.6958
					Lus10005396 [exp]	22.1	0.6773
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Lus10011160 [exp]	22.8	0.5992
					Lus10003840 [exp]	24.7	0.6773
AT2G18370			Bifunctional inhibitor/lipid-t...		Lus10001431 [exp]	27.1	0.6773
					Lus10022573 [exp]	29.2	0.6773
					Lus10006661 [exp]	31.2	0.6773

Compare expression of checked genes

Lus10037955 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.