Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G24430 210 / 5e-63 HXXXD-type acyl-transferase family protein (.1) AT3G26040 208 / 2e-62 HXXXD-type acyl-transferase family protein (.1) AT1G24420 176 / 5e-50 HXXXD-type acyl-transferase family protein (.1) AT3G30280 174 / 2e-49 HXXXD-type acyl-transferase family protein (.1) AT5G47950 162 / 3e-45 HXXXD-type acyl-transferase family protein (.1) AT4G15390 162 / 8e-45 HXXXD-type acyl-transferase family protein (.1) AT5G23970 145 / 5e-39 HXXXD-type acyl-transferase family protein (.1) AT5G47980 140 / 7e-37 HXXXD-type acyl-transferase family protein (.1) AT4G15400 110 / 4e-26 HXXXD-type acyl-transferase family protein (.1) AT5G41040 102 / 2e-23 HXXXD-type acyl-transferase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038689 [exp] 836 / 0 AT3G26040 214 / 2e-64 HXXXD-type acyl-transferase family protein (.1) Lus10028813 [exp] 516 / 0 AT1G24430 218 / 3e-66 HXXXD-type acyl-transferase family protein (.1) Lus10017469 [exp] 516 / 0 AT1G24430 224 / 3e-68 HXXXD-type acyl-transferase family protein (.1) Lus10017468 [exp] 303 / 1e-98 AT3G26040 207 / 5e-62 HXXXD-type acyl-transferase family protein (.1) Lus10028814 [exp] 299 / 5e-97 AT3G26040 204 / 1e-60 HXXXD-type acyl-transferase family protein (.1) Lus10037952 [exp] 285 / 6e-94 AT1G24430 130 / 5e-35 HXXXD-type acyl-transferase family protein (.1) Lus10004441 [exp] 261 / 1e-82 AT3G26040 196 / 2e-57 HXXXD-type acyl-transferase family protein (.1) Lus10030751 [exp] 250 / 3e-78 AT3G26040 297 / 2e-96 HXXXD-type acyl-transferase family protein (.1) Lus10036043 [exp] 249 / 1e-77 AT3G26040 205 / 4e-61 HXXXD-type acyl-transferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034300 [exp] 491 / 1e-172 AT3G26040 280 / 1e-89 HXXXD-type acyl-transferase family protein (.1) Potri.008G033500 [exp] 491 / 6e-172 AT3G26040 290 / 3e-93 HXXXD-type acyl-transferase family protein (.1) Potri.008G034100 [exp] 457 / 6e-159 AT3G26040 270 / 4e-86 HXXXD-type acyl-transferase family protein (.1) Potri.008G034200 [exp] 436 / 1e-150 AT3G26040 254 / 9e-80 HXXXD-type acyl-transferase family protein (.1) Potri.011G124500 [exp] 277 / 1e-88 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124268 [exp] 277 / 1e-88 AT3G26040 281 / 2e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124184 [exp] 273 / 6e-87 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124300 [exp] 273 / 6e-87 AT3G26040 278 / 5e-89 HXXXD-type acyl-transferase family protein (.1) Potri.011G124128 [exp] 271 / 3e-86 AT3G26040 282 / 1e-90 HXXXD-type acyl-transferase family protein (.1) Potri.011G124156 [exp] 270 / 5e-86 AT3G26040 284 / 2e-91 HXXXD-type acyl-transferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0149 [flax] [poplar] CoA-acyltrans PF02458 [flax] [poplar] Transferase Transferase family
Representative CDS sequence Show only first row Show all	>Lus10037956 pacid=23163764 polypeptide=Lus10037956 locus=Lus10037956.g ID=Lus10037956.BGIv1.0 annot-version=v1.0 ATGGATGTAAGAATTATTACTAAGGAGCTAGTGAAGCCATCTTCCCCTGAAACCACCAACACCAAACCTCCCCACAAGTTATGCCTCTTCGACCAGCTCA CTCCCTTAACCTTCTCCCCACTCATCCTCTTCTACTCAACTCCTCCTCCAAGCTTCTCCATCTCCCACCTCAAGCTCTCCTTATCCCGAACTCTCGACAT TTACTACCCTTTCTCCGGCAGGACCACCTCCGCCAACTTGTTCATCCACAACTTCAACGCAGGACTCCCTTTCACTCTAGCTCAAACCCATTCCCGCCTT TCCCATTTTTTGAAAAACAACGACGACCCTGAACTCCTCAACCTCCTCCTCCCTCGTCAGCCCTTTCAGAAAGAGAACACAACCCTTGATGCCCCTGTTT TGGAGCTCCAGGTCTCTGTTTTCTCATGCGGCGGAATTGCACTAGGTTGGGCTGCTTCCCATAAGCTAGTCGACGGATCCACAATGAAAGCGTTCCTCGA TACATTCACCGCGATTTCCAGAGGGAATCGAAATGACATCGTTTCCCCTGACTTATTCACAGCGGCTGAGCTCTTCCCGCCTAGGGTTCCTTCCCCTGAT AATTACCTCAACCTGATGGAGACGCTATGGTTCACCCAAGGCGACTACTTGACCAGGCGATTCGTCTTCGATTCGAACGCGATTTCGAATTTGAGAGCCA TGGCTGCTTCCGGCGGAGATAGGGTTACTAAGCTGTCGAGAGTGGAGGCGCTGTCGTGTTTCATATGGAAATGCTGTATGGCGGCGTCGAAGGCAGTGGG GAGGACTTCAAAGACGTCGATCCTAGTGGAGGCGGTGAATCTTCGTTGCCAGACGGATCCGCCGATGACGGAGGCGTCGATCGGGGACGTGTTCTGGTGG GGGACGGCGGTTGCGAACCCTAACGATGAATCGGAGAACGAGATGTCGGAGTTGGGGAAGCTGGTGAGCGAGGCGATTGGGCTTTATAAGAGTGAGTACG TGGGGGCGCTCCAGGGGGAAGAGGGGTTCGAGTCGATGTCCGGTTATTTCGAGCAGCTGGAGGGTTTGTTCGATGAGGAGAAGCCGGATATATTTGCTTT CACGAGCTGGTCCGGGTTTGGGTTCACTCGTCAGGATTTCGGGTGGGGGAAACCGGTTTGGGCTACGGTGATGGGAAAAGTGGGTCGGGCGTTCAGGAAC CTGACGGTGTTCATGGACTCCACGGAACGGAGAGGGAGCATCGAGGCTTGGGTTACTTTGGACCGGGAAAGGATGGCCGTTCTTGAAACCGATCCTAACT TCCTTGCCTTTGCTTCTACTAATCTTATGGTTTCTAACCTTTGA
AA sequence Show only first row Show all	>Lus10037956 pacid=23163764 polypeptide=Lus10037956 locus=Lus10037956.g ID=Lus10037956.BGIv1.0 annot-version=v1.0 MDVRIITKELVKPSSPETTNTKPPHKLCLFDQLTPLTFSPLILFYSTPPPSFSISHLKLSLSRTLDIYYPFSGRTTSANLFIHNFNAGLPFTLAQTHSRL SHFLKNNDDPELLNLLLPRQPFQKENTTLDAPVLELQVSVFSCGGIALGWAASHKLVDGSTMKAFLDTFTAISRGNRNDIVSPDLFTAAELFPPRVPSPD NYLNLMETLWFTQGDYLTRRFVFDSNAISNLRAMAASGGDRVTKLSRVEALSCFIWKCCMAASKAVGRTSKTSILVEAVNLRCQTDPPMTEASIGDVFWW GTAVANPNDESENEMSELGKLVSEAIGLYKSEYVGALQGEEGFESMSGYFEQLEGLFDEEKPDIFAFTSWSGFGFTRQDFGWGKPVWATVMGKVGRAFRN LTVFMDSTERRGSIEAWVTLDRERMAVLETDPNFLAFASTNLMVSNL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G24430			HXXXD-type acyl-transferase fa...		Lus10037956 [exp]	0	1
AT4G00850		GIF3	GRF1-interacting factor 3 (.1)		Lus10032892 [exp]	3.0	0.8490
AT1G80100		AHP6	histidine phosphotransfer prot...		Lus10011487 [exp]	3.5	0.8410
AT3G07590			Small nuclear ribonucleoprotei...		Lus10003727 [exp]	5.5	0.8719
AT5G42630	GARP	KAN4, KANADI4, ...	KANADI 4, ABERRANT TESTA SHAPE...		Lus10011660 [exp]	5.7	0.8285
AT3G26120		TEL1	terminal EAR1-like 1 (.1)		Lus10006234 [exp]	5.9	0.8330
AT5G10510	AP2_ERF	PLT3, AIL6	PLETHORA 3, AINTEGUMENTA-like ...		Lus10012728 [exp]	7.3	0.8605
AT1G44910		ATPRP40A	pre-mRNA-processing protein 40...		Lus10007723 [exp]	8.2	0.8482
AT3G07590			Small nuclear ribonucleoprotei...		Lus10028022 [exp]	12.4	0.8481
AT1G54250		NRPE8A, NRPB8A,...	RNA polymerase Rpb8 (.1)		Lus10013760 [exp]	13.4	0.8052
AT5G65520			Tetratricopeptide repeat (TPR)...		Lus10025714 [exp]	14.1	0.7939

Compare expression of checked genes

Lus10037956 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.