Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54880 71 / 7e-17 unknown protein AT5G03440 57 / 1e-11 unknown protein AT3G15770 58 / 3e-11 unknown protein AT5G25360 53 / 2e-09 unknown protein AT4G32342 53 / 2e-09 unknown protein AT1G15350 38 / 0.0004 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038690 [exp] 181 / 1e-59 AT3G54880 81 / 1e-20 unknown protein Lus10013824 [exp] 66 / 7e-15 AT3G54880 108 / 1e-31 unknown protein Lus10026537 [exp] 57 / 7e-12 AT5G03440 97 / 5e-28 unknown protein Lus10002164 [exp] 40 / 0.0002 AT5G25360 174 / 3e-56 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227800 [exp] 84 / 6e-22 AT3G54880 123 / 7e-38 unknown protein Potri.008G034600 [exp] 82 / 3e-21 AT3G54880 120 / 8e-37 unknown protein Potri.006G254000 [exp] 61 / 4e-12 AT5G25360 197 / 3e-65 unknown protein Potri.018G027800 [exp] 58 / 4e-11 AT5G25360 182 / 1e-58 unknown protein Potri.001G192700 [exp] 56 / 2e-10 AT5G25360 169 / 1e-54 unknown protein Potri.006G068600 [exp] 49 / 8e-08 AT5G25360 194 / 9e-64 unknown protein Potri.018G130900 [exp] 38 / 0.0006 AT5G25360 140 / 8e-43 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037957 pacid=23163853 polypeptide=Lus10037957 locus=Lus10037957.g ID=Lus10037957.BGIv1.0 annot-version=v1.0 ATGGAGGTTAATGCTGGAAGTTCACTGTCCAAGAAGAACGCTTTACAGAACCCTAAGGCTAAAACTGCTGCTGAAGCTGCCAAACCTGCAGCAAAAGATG TAAACCACCCTCGTGATTTTGTCAATCATGGTGAGCCATTGTTCCTCGGTGCATTGTCTTGGCATGAAAGTAGGAGGAAGTGGATCGGTGATCATCCTTG TAAAGTCCAAAGAACTATAATACCAGATCCAATTATAAGCTGGTCAACAACCTATGAAGAATTACTTTCGACACATGAGCCGTTTGCGGAACCAATCCCT TTGCACCTCAGTGTCTTAAGTGCAGAGCTTGGAGATACAGAGATATCACTGAAAAGGGTTTGTATGCAGGATAATGCTGTGAAAGGTGCCGAGCTTGCTT TTTAA
AA sequence Show only first row Show all	>Lus10037957 pacid=23163853 polypeptide=Lus10037957 locus=Lus10037957.g ID=Lus10037957.BGIv1.0 annot-version=v1.0 MEVNAGSSLSKKNALQNPKAKTAAEAAKPAAKDVNHPRDFVNHGEPLFLGALSWHESRRKWIGDHPCKVQRTIIPDPIISWSTTYEELLSTHEPFAEPIP LHLSVLSAELGDTEISLKRVCMQDNAVKGAELAF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54880			unknown protein		Lus10037957 [exp]	0	1
AT5G04850		VPS60.2	SNF7 family protein (.1.2)		Lus10043454 [exp]	8.3	0.6632
AT4G14200			Pentatricopeptide repeat (PPR)...		Lus10041255 [exp]	18.8	0.6718
AT1G03080			kinase interacting (KIP1-like)...		Lus10006607 [exp]	32.9	0.6325
AT4G16650			O-fucosyltransferase family pr...		Lus10007481 [exp]	34.4	0.6315
AT4G16650			O-fucosyltransferase family pr...		Lus10028957 [exp]	43.0	0.6176
AT2G26700		PID2	PINOID2, AGC (cAMP-dependent, ...		Lus10033029 [exp]	60.4	0.6063
					Lus10019329 [exp]	103.6	0.5740
					Lus10025147 [exp]	108.4	0.5475
AT3G16500	AUX_IAA	IAA26, PAP1	indole-3-acetic acid inducible...		Lus10038284 [exp]	117.4	0.5740
AT2G22140		ATEME1B	essential meiotic endonuclease...		Lus10006798 [exp]	146.6	0.5487

Compare expression of checked genes

Lus10037957 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.