Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10410 708 / 0 CPY, SCPL49 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) AT3G45010 646 / 0 SCPL48 serine carboxypeptidase-like 48 (.1) AT5G22980 604 / 0 SCPL47 serine carboxypeptidase-like 47 (.1) AT5G22960 208 / 1e-64 alpha/beta-Hydrolases superfamily protein (.1) AT1G15000 183 / 3e-52 SCPL50 serine carboxypeptidase-like 50 (.1) AT1G73300 171 / 9e-48 SCPL2 serine carboxypeptidase-like 2 (.1) AT1G73290 169 / 7e-47 SCPL5 serine carboxypeptidase-like 5 (.1) AT3G17180 166 / 2e-45 SCPL33 serine carboxypeptidase-like 33 (.1) AT4G30810 163 / 2e-44 SCPL29 serine carboxypeptidase-like 29 (.1) AT1G73280 162 / 3e-44 SCPL3 serine carboxypeptidase-like 3 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038691 [exp] 968 / 0 AT3G10410 711 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10017466 [exp] 810 / 0 AT3G10410 689 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10041339 [exp] 597 / 0 AT3G45010 657 / 0.0 serine carboxypeptidase-like 48 (.1) Lus10041338 [exp] 409 / 6e-140 AT3G45010 460 / 3e-160 serine carboxypeptidase-like 48 (.1) Lus10037381 [exp] 406 / 1e-138 AT3G10410 456 / 2e-158 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Lus10037380 [exp] 203 / 3e-63 AT3G45010 216 / 1e-68 serine carboxypeptidase-like 48 (.1) Lus10042334 [exp] 186 / 6e-53 AT1G15000 439 / 5e-152 serine carboxypeptidase-like 50 (.1) Lus10026331 [exp] 180 / 1e-50 AT1G15000 435 / 2e-150 serine carboxypeptidase-like 50 (.1) Lus10041000 [exp] 174 / 1e-48 AT1G15000 473 / 2e-165 serine carboxypeptidase-like 50 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034800 [exp] 773 / 0 AT3G10410 734 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.010G227700 [exp] 764 / 0 AT3G10410 729 / 0.0 CARBOXYPEPTIDASE Y, SERINE CARBOXYPEPTIDASE-LIKE 49 (.1) Potri.004G215400 [exp] 650 / 0 AT3G45010 692 / 0.0 serine carboxypeptidase-like 48 (.1) Potri.005G060100 [exp] 194 / 3e-56 AT1G15000 523 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129800 [exp] 177 / 8e-50 AT1G15000 529 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.008G129850 [exp] 176 / 1e-49 AT1G15000 524 / 0.0 serine carboxypeptidase-like 50 (.1) Potri.009G006701 [exp] 158 / 1e-46 AT3G45010 171 / 7e-52 serine carboxypeptidase-like 48 (.1) Potri.006G036500 [exp] 165 / 3e-45 AT1G28110 619 / 0.0 serine carboxypeptidase-like 45 (.1.2) Potri.018G103100 [exp] 165 / 3e-45 AT4G30810 682 / 0.0 serine carboxypeptidase-like 29 (.1) Potri.012G105500 [exp] 163 / 2e-44 AT1G28110 751 / 0.0 serine carboxypeptidase-like 45 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00450 [flax] [poplar] Peptidase_S10 Serine carboxypeptidase
Representative CDS sequence Show only first row Show all	>Lus10037958 pacid=23163917 polypeptide=Lus10037958 locus=Lus10037958.g ID=Lus10037958.BGIv1.0 annot-version=v1.0 ATGGCCAAGGATATGTCGTTTACACTCAGGGTCTTCCTCGTTCTATCGCTGATCGTCTGTTCCCGGGCAGCGGAGGACTTCGCTTCCATCGCCAAGTCCA GTTTCCCCTCCATCCAGGCGGAGAAGTTCATTCGGGATCTCAATCTCTTCCCCAAGCAGGATGTCAACATCATCCAAGGCCTCGGCCAGGCTCCCACCGG GAAGAAGCTTGTGGAGAAGCCCCTCAGGTTCCCTAATCTCGTTGGTAATGATACCAAGGAGTTTTCCGTCGAGGATTTGGGCCACCACGCTGGTTATTAC AATATTGAGCATTCTTATGCTGCCAAGATGTTTTACTTCTTCTTCGAGTCCCGCAACAGTAAGGACGACCCGGTTGTCATCTGGTTGACTGGGGGGCCGG GATGCAGCAGTGAGCTGGCCATATTCTATGAGAATGGCCCTTTCAGCATTGCAGATAACATGTCTCTTGTATGGAACAAATTCGGCTGGGACCAGGCTTC AAATCTTATTTATGTTGATCAGCCCACTGGGACAGGGTTCAGCTATAGCACTGATCGTCGTGACATTCGACACAATGAAGATGGAGTGAGTAATGACATG TATGACTTCTTGCAGGCTTTTTTCACAGAACATCCTGAACTTGCAAAGAATGACTTCTACATTACTGGTGAATCATATGCTGGCCACTACATTCCTGCTT TTGCTTCTCGTGTTCACAAAGGAAACAAGAATAATGAAGGGATCCACATAAATCTCAAGGGTTTCGCGATTGGCAATGGCCTTACAGATCCTGCAGTGCA GTATAAGGCTTACCCAGATTTCGCATTAGAGAATGGGATAATCAAGGAATCACAGTACAAGTTGATTAATAAGGTGGTGCCGGTGTGTGAACTTGCAATT AAGCTGTGTGGGACTGATGGTACCGTCTCCTGTATGGCTTCATATTTTGTTTGCAATGGCATATTCAATGCTATTATTGGTATTGCTGGTAATATAAACT ATTATGACATTAGGAAGCAATGTGAGGGGAGCCTTTGCTACGACTTCTCAAACATGGAAAAATTTCTAAACTTGAATAACGTAAGGGAGTCCCTTGGGGT GGGCGATATAGAATTTGTGTCATGTAGTCCTACTGTTTATGAGGCCATGCTGGTGGACTGGATGAGGAACCTTGAAGTGGGCATTCCTGCTCTCCTTGAG GATGGCATTAAAATGCTCATATATGCCGGTGAATATGATCTCATCTGCAATTGGCTTGGTAACTCGCGATGGGTTCATGCTATGGAGTGGTCTGGTCAGA AAGAGTTTGTGTCATCTCCGGAGATATCCTTCGAGGTTGACGGTTCAGAAGCTGGAGTGCTGAAAACTCATGGACCCTTGGCCTTCCTCAAGGTCCGCAA TGCTGGTCACATGGTTCCAATGGACCAGCCTAAGGCTGCATTGGAGATGCTGAAGAGGTGGACTCAAGGCGAGATATCTGATGTGCCGGTCAACAAATCG AATCCGGAGAAATTGGTTGCAGAATTCTAA
AA sequence Show only first row Show all	>Lus10037958 pacid=23163917 polypeptide=Lus10037958 locus=Lus10037958.g ID=Lus10037958.BGIv1.0 annot-version=v1.0 MAKDMSFTLRVFLVLSLIVCSRAAEDFASIAKSSFPSIQAEKFIRDLNLFPKQDVNIIQGLGQAPTGKKLVEKPLRFPNLVGNDTKEFSVEDLGHHAGYY NIEHSYAAKMFYFFFESRNSKDDPVVIWLTGGPGCSSELAIFYENGPFSIADNMSLVWNKFGWDQASNLIYVDQPTGTGFSYSTDRRDIRHNEDGVSNDM YDFLQAFFTEHPELAKNDFYITGESYAGHYIPAFASRVHKGNKNNEGIHINLKGFAIGNGLTDPAVQYKAYPDFALENGIIKESQYKLINKVVPVCELAI KLCGTDGTVSCMASYFVCNGIFNAIIGIAGNINYYDIRKQCEGSLCYDFSNMEKFLNLNNVRESLGVGDIEFVSCSPTVYEAMLVDWMRNLEVGIPALLE DGIKMLIYAGEYDLICNWLGNSRWVHAMEWSGQKEFVSSPEISFEVDGSEAGVLKTHGPLAFLKVRNAGHMVPMDQPKAALEMLKRWTQGEISDVPVNKS NPEKLVAEF

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10410		CPY, SCPL49	CARBOXYPEPTIDASE Y, SERINE CAR...		Lus10037958 [exp]	0	1
AT5G52840			NADH-ubiquinone oxidoreductase...		Lus10027539 [exp]	4.7	0.9213
AT5G06660			Protein of unknown function DU...		Lus10029308 [exp]	4.9	0.9259
AT1G15140			FAD/NAD(P)-binding oxidoreduct...		Lus10034633 [exp]	8.9	0.8690
AT4G26000		PEP	PEPPER, RNA-binding KH domain-...		Lus10026963 [exp]	9.5	0.8970
AT4G24330			Protein of unknown function (D...		Lus10015491 [exp]	9.9	0.9041
AT4G33410		ATSPPL1	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10039239 [exp]	11.2	0.9035
AT5G67500		VDAC2, ATVDAC2	ARABIDOPSIS THALIANA VOLTAGE D...		Lus10011539 [exp]	11.5	0.9178
AT3G07425			unknown protein		Lus10038229 [exp]	12.0	0.8466
AT3G26400		EIF4B1	eukaryotic translation initiat...		Lus10011412 [exp]	13.0	0.9126
AT2G11890			adenylate cyclases (.1.2)		Lus10008820 [exp]	13.6	0.9164

Compare expression of checked genes

Lus10037958 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.