Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10405 197 / 1e-62 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038692 [exp] 170 / 4e-52 AT3G10405 138 / 6e-41 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G034900 [exp] 225 / 2e-73 AT3G10405 217 / 1e-71 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037959 pacid=23163682 polypeptide=Lus10037959 locus=Lus10037959.g ID=Lus10037959.BGIv1.0 annot-version=v1.0 ATGGCTTCGCCAATTGGAACTTCGGCCGTCGGTAGCGGTTGTTTCAATTCTATGCATCCGCCAATTTGGTTGGTTCGATCTGTATCATCCAGCCATCATC CAGTTCCCGCCCACTTCTTCTCGCCGCACCCAAAGGCTGCTACTATGGTTGGCTTTAATAATAATCTGAATCTGAATCTCTCTGCGAAGAACAAATCCCT ATCAAGAGCTTCATCTGCACAAGGAATCCCGAATGAGTTGGATGAAGATTCCAAGTTCGTCCCCTTGAATGCTGATGACCCAGTGTTTGGTCCACCTGCT CTGTTGTTGTTAGGATTTGAAATTGAGGAAGCTGCCAAGATACAGAAGCTTTTACAGGAGATGGGTGGTGAATTCTTGCAGCTAATCTTCTGTACGGAAG ACATGGTTTCTGGATCACTTTGGGAAGCAATCAACACAGCTCAACCAAATCTAAAAGCTTTGAAGGTTGCCAAGTCCCTGCCACGGATTTGCTTCATATC TGGCCTTTCTGGAGAGGAGACGATGATGTTCATTGATGCTTTCCCAGAAGCCGGTAGTGTATTGATCATTCTGCAACTCCAGGAAGAAGCTGGAGATAAT ATAGACGTTTACAAGATACAAAAGTGTTCCATCAATTTCATAATTTGTTTATTGGCAGGTCTTGAAGCAGCTGTTTTTGCAGCACTTGTTCCCAACAGTG CTGATAAACCCATTTATGAATTGGTGGAAGAAATCATGGGGGATCATGAAATCATGGTGGCCACTAATCCTTCTTCAACTCTGCTTTCATACAATCCATG TAGTAAAGAACAATGTTCTTATATGTTTCTTCTTCATAAACCCTCAATGCTTTCTTTGCAGACTGGTAGGCAGCAATGA
AA sequence Show only first row Show all	>Lus10037959 pacid=23163682 polypeptide=Lus10037959 locus=Lus10037959.g ID=Lus10037959.BGIv1.0 annot-version=v1.0 MASPIGTSAVGSGCFNSMHPPIWLVRSVSSSHHPVPAHFFSPHPKAATMVGFNNNLNLNLSAKNKSLSRASSAQGIPNELDEDSKFVPLNADDPVFGPPA LLLLGFEIEEAAKIQKLLQEMGGEFLQLIFCTEDMVSGSLWEAINTAQPNLKALKVAKSLPRICFISGLSGEETMMFIDAFPEAGSVLIILQLQEEAGDN IDVYKIQKCSINFIICLLAGLEAAVFAALVPNSADKPIYELVEEIMGDHEIMVATNPSSTLLSYNPCSKEQCSYMFLLHKPSMLSLQTGRQQ

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10405			unknown protein		Lus10037959 [exp]	0	1
AT1G65260		VIPP1, PTAC4	VESICLE-INDUCING PROTEIN IN PL...		Lus10025601 [exp]	1.0	0.9618
AT3G16250		PnsB3, NDF4	Photosynthetic NDH subcomplex...		Lus10038292 [exp]	4.2	0.9599
AT1G22630			unknown protein		Lus10018614 [exp]	4.5	0.9555
AT5G16140			Peptidyl-tRNA hydrolase family...		Lus10031901 [exp]	4.6	0.9408
AT4G18370		DEGP5, DEG5, HH...	PROTEASE HHOA PRECUSOR, DEGP p...		Lus10042822 [exp]	5.3	0.9537
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10040937 [exp]	6.9	0.9453
AT1G67700			unknown protein		Lus10006442 [exp]	7.1	0.9572
AT5G13410			FKBP-like peptidyl-prolyl cis-...		Lus10009828 [exp]	7.4	0.9219
AT1G70760		NdhL, CRR23	NADH dehydrogenase-like comple...		Lus10012886 [exp]	9.5	0.9451
AT2G01755			unknown protein		Lus10030691 [exp]	11.6	0.9437

Compare expression of checked genes

Lus10037959 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.