Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10400 215 / 2e-69 U11/U12-31K U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT4G20030 75 / 2e-16 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT3G23830 64 / 1e-12 AtGRP4, GR-RBP4, GRP4 glycine-rich RNA-binding protein 4 (.1.2) AT5G64200 64 / 1e-11 ATSC35, At-SC35 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) AT1G23860 60 / 9e-11 SRZ21, SRZ-21, RSZP21, RSZ21, At-RSZ21 RS-containing zinc finger protein 21 (.1.2.3.4) AT1G53720 61 / 2e-10 ATCYP59, CYP59 cyclophilin 59 (.1) AT4G13860 56 / 2e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT1G60650 60 / 3e-10 AtRZ-1b AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT3G46020 56 / 3e-10 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT4G19610 59 / 1e-09 nucleotide binding;nucleic acid binding;RNA binding (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038693 [exp] 368 / 8e-130 AT3G10400 244 / 6e-81 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Lus10002699 [exp] 62 / 5e-11 AT3G55460 138 / 3e-39 SC35-like splicing factor 30 (.1) Lus10006936 [exp] 60 / 6e-11 AT4G20030 137 / 4e-42 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10015146 [exp] 58 / 2e-10 AT3G08000 145 / 5e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Lus10026925 [exp] 58 / 3e-10 AT4G31580 184 / 2e-59 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Lus10000953 [exp] 61 / 4e-10 AT2G39670 588 / 0.0 Radical SAM superfamily protein (.1.2) Lus10003957 [exp] 59 / 4e-10 AT5G64200 217 / 9e-70 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Lus10002222 [exp] 59 / 4e-10 AT3G53460 263 / 1e-87 chloroplast RNA-binding protein 29 (.1.2.3.4) Lus10031534 [exp] 57 / 5e-10 AT3G08000 146 / 2e-46 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227500 [exp] 255 / 1e-85 AT3G10400 223 / 7e-73 U11/U12-31K, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) Potri.003G074900 [exp] 68 / 6e-14 AT4G20030 164 / 2e-52 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.003G023800 [exp] 62 / 5e-11 AT5G64200 207 / 4e-66 ARABIDOPSIS THALIANA ORTHOLOG OF HUMAN SPLICING FACTOR SC35, ortholog of human splicing factor SC35 (.1.2) Potri.019G050600 [exp] 60 / 6e-11 AT1G23860 131 / 3e-39 RS-containing zinc finger protein 21 (.1.2.3.4) Potri.005G097500 [exp] 62 / 8e-11 AT1G53720 667 / 0.0 cyclophilin 59 (.1) Potri.014G157300 [exp] 58 / 1e-10 AT3G08000 129 / 2e-39 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.008G033000 [exp] 60 / 2e-10 AT1G60650 172 / 3e-52 AtRZ-1b, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Potri.008G022280 [exp] 57 / 2e-10 AT3G20930 203 / 2e-65 RNA-binding (RRM/RBD/RNP motifs) family protein (.1) Potri.010G228700 [exp] 60 / 3e-10 AT5G04280 172 / 7e-52 AtRZ-1c, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1) Potri.008G022200 [exp] 59 / 5e-10 AT3G20930 427 / 3e-149 RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0511 [flax] [poplar] Retroviral_zf PF00098 [flax] [poplar] zf-CCHC Zinc knuckle CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10037960 pacid=23163890 polypeptide=Lus10037960 locus=Lus10037960.g ID=Lus10037960.BGIv1.0 annot-version=v1.0 ATGGGCAAGGGCCGGGGGAGCGACAGCGATGAGGACGACACCTTCTACTACCGATATGCCTCCGTCTCAGCCCCACCTCCACCGTCAACATCCACTTCCG CCTCCAACCGAAACTCAAAGCCGAGCAATTCAGGCGGCCTAGCTCCGTCCAAGTCCACCGTTTACGTATCGAATCTGGATTTCACCCTCACAAACTCTGA TCTACACACCCTCTTCTCCACCTTCGGCAAGATAGCTCGAGTCACCGTCCTCAAGGACAGGGCCACCCGCCAGTCCCGCGGCGTGGCCTTCATTCAGTTC GTCTCCCGCGACGACGCCGTCTCCGCCGCCCGCCAGATGGACAAGAAGATCCTCAACGGGCGAACCCTATCAGCGAACATCGCCAACGACAACGGCCGGG CGACTGAGTTCATCAAGAAGAGGGTTTATCTGGATAAGAGCAGGTGCTACGAGTGTGGAGAGGGCGGTCATCTTTCGTACGAGTGCCCTAAGAATCAGCT GGGCCCTAGGGAGAGGCCCGCGCCGAAGCGGACCCGAAGAGGCGGCGGCGGGGGTGGGGGAGGGGTTCATAGGAGGAAGGAGGTGGAGGCGGCGGCGGAG GATGACGATGACGAAGGGGTGAATGATGGGGGAGGATTTGAAGAGGAGAATTGGGCTTCGGTGGTTGATGGTAGGGCGGATGAGAGATTGTTGACAGGAG ATGAAGATGGAAACGGCGTAGGGAAGAAGAAGGTGAAGAAAGCCAGTTATTTCAGCGACGAGAGTGACGACGAGGATTGA
AA sequence Show only first row Show all	>Lus10037960 pacid=23163890 polypeptide=Lus10037960 locus=Lus10037960.g ID=Lus10037960.BGIv1.0 annot-version=v1.0 MGKGRGSDSDEDDTFYYRYASVSAPPPPSTSTSASNRNSKPSNSGGLAPSKSTVYVSNLDFTLTNSDLHTLFSTFGKIARVTVLKDRATRQSRGVAFIQF VSRDDAVSAARQMDKKILNGRTLSANIANDNGRATEFIKKRVYLDKSRCYECGEGGHLSYECPKNQLGPRERPAPKRTRRGGGGGGGGVHRRKEVEAAAE DDDDEGVNDGGGFEEENWASVVDGRADERLLTGDEDGNGVGKKKVKKASYFSDESDDED

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10400		U11/U12-31K	U11/U12-31K, RNA recognition m...		Lus10037960 [exp]	0	1
AT5G56520			unknown protein		Lus10020285 [exp]	8.1	0.8423
AT3G51100			unknown protein		Lus10041813 [exp]	9.0	0.8497
AT5G58340	MYB		myb-like HTH transcriptional r...		Lus10017319 [exp]	11.0	0.8319
AT3G10030	Trihelix		aspartate/glutamate/uridylate ...		Lus10008988 [exp]	12.8	0.8471
AT4G11560			bromo-adjacent homology (BAH) ...		Lus10008492 [exp]	13.9	0.8204
AT5G58040		FIP1[V], ATFIP1...	homolog of yeast FIP1 [V], hom...		Lus10019609 [exp]	17.3	0.8362
					Lus10011965 [exp]	20.8	0.8127
AT4G32340			Tetratricopeptide repeat (TPR)...		Lus10002914 [exp]	21.2	0.7834
AT3G11400		ATEIF3G1, EIF3G...	eukaryotic translation initiat...		Lus10017459 [exp]	23.7	0.7929
AT5G57230			Thioredoxin superfamily protei...		Lus10003582 [exp]	23.7	0.8421

Compare expression of checked genes

Lus10037960 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.