Plant FIBer expression Database

Lus10037961 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT2G39170 99 / 6e-26 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10018298
[exp]
166 / 2e-52 AT2G39170 163 / 6e-50 unknown protein
Lus10040608
[exp]
164 / 3e-51 AT2G39170 180 / 2e-56 unknown protein
Lus10017465
[exp]
127 / 1e-36 AT2G39170 177 / 3e-55 unknown protein
Lus10028816
[exp]
125 / 6e-36 AT2G39170 176 / 1e-54 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G227400
[exp]
118 / 3e-33 AT2G39170 214 / 2e-69 unknown protein
Potri.008G035000
[exp]
117 / 2e-32 AT2G39170 196 / 1e-61 unknown protein
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF10167 BORCS8 BLOC-1-related complex sub-unit 8
Representative CDS sequence
>Lus10037961 pacid=23163920 polypeptide=Lus10037961 locus=Lus10037961.g ID=Lus10037961.BGIv1.0 annot-version=v1.0
ATGAACCCTCTGTGGGGGGTTTTCTATGTCCAGCAGCATGTCCAAACTGCAGCTCCGAATGTCATCGACATCAGGAGAAGTGTAGCTGACCAGTCTCGTG
AAACAAGCTTGAACACTGAAGACTTGGAGGATTCTATTACCATGGTGAGATCGACGAAAGAATGTGGTTTCCCCGTTGCAAATGAGATGATCAAAGACAT
TAGGAAATACATAGCAATAATGTCCGAGAAGCAGCAAAAGAGAGGATTAGGTCCTCGATCATCTTCTAGCCAGGTTTCTGATGAGACGATCCAGAACCAC
CGACTCATGGGGACAGCGACGAAGCTGTTGGCAAAAAGTCAGTTTATCGAATCCAGCAGTACGAGCTCTTCTGCAGTTGATGCTGAAGCTGACGAGTTGC
CTTTGTCAAGCCAGACAGCTGAAGACACTGCTGGAGAGCTCCAAACAGAGACAGAACTGGACTGA
AA sequence
>Lus10037961 pacid=23163920 polypeptide=Lus10037961 locus=Lus10037961.g ID=Lus10037961.BGIv1.0 annot-version=v1.0
MNPLWGVFYVQQHVQTAAPNVIDIRRSVADQSRETSLNTEDLEDSITMVRSTKECGFPVANEMIKDIRKYIAIMSEKQQKRGLGPRSSSSQVSDETIQNH
RLMGTATKLLAKSQFIESSSTSSSAVDAEADELPLSSQTAEDTAGELQTETELD

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT2G39170 unknown protein Lus10037961
[exp]
0 1
AT1G78930 Mitochondrial transcription te... Lus10035714
[exp]
10.1 0.6901
AT2G31980 AtCYS2 PHYTOCYSTATIN 2 (.1) Lus10041257
[exp]
17.7 0.6941
AT5G53210 bHLH SPCH, bHLH098 SPEECHLESS, basic helix-loop-h... Lus10039328
[exp]
29.8 0.6742
AT3G24050 GATA GATA1 GATA transcription factor 1 (.... Lus10031464
[exp]
31.5 0.6558
AT4G19985 Acyl-CoA N-acyltransferases (N... Lus10003689
[exp]
63.1 0.5884
AT2G19800 MIOX2 myo-inositol oxygenase 2 (.1) Lus10006198
[exp]
92.6 0.6014
Lus10035030
[exp]
96.2 0.5445
Lus10033149
[exp]
105.0 0.5505
AT1G70690 HWI1, PDLP5 PLASMODESMATA-LOCATED PROTEIN ... Lus10019334
[exp]
105.5 0.5505
AT1G29430 SAUR-like auxin-responsive pro... Lus10020441
[exp]
106.0 0.5505

Lus10037961 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.