Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10380 1078 / 0 SEC8, ATSEC8 subunit of exocyst complex 8 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038694 [exp] 1592 / 0 AT3G10380 1336 / 0.0 subunit of exocyst complex 8 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227100 [exp] 1248 / 0 AT3G10380 1484 / 0.0 subunit of exocyst complex 8 (.1) Potri.008G035300 [exp] 1238 / 0 AT3G10380 1475 / 0.0 subunit of exocyst complex 8 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0295 [flax] [poplar] Vps51 PF04048 [flax] [poplar] Sec8_exocyst Sec8 exocyst complex component specific domain
Representative CDS sequence Show only first row Show all	>Lus10037962 pacid=23163698 polypeptide=Lus10037962 locus=Lus10037962.g ID=Lus10037962.BGIv1.0 annot-version=v1.0 ATGGGGATTTTCGATGGATTGCCCGTTCCACCTGATAAAGAGGATTTAAGAGATGAGCTATCGAAGATTGATGAGAGCTGGGCTACTGCTCGGTTTGACT CGTTGCCTCATGTTGTTCATATTCTAACATCAAAAGATCGTGAAAGGGAACTCCACTATCTGAAGGAACAAAGAGATATAGTTGAGGATGTTGTGGACGA AGTTGTGCAAGCTTACCACGGTGGCTTTAATAAAGCCATTCAAAACTATTCTCAGATATTGAGGCTGTTCAGTGAGTCTTCTGAAAGCATTAGTACATTA AAAGTTGATTTGACGGAGGCAAAACAGCGTCTTGGTGCTCGAAACAAGCAATTACATCAGTTATGGTATCGATCTGTCACACTAAGGCACATCATTGCAT TATTAGATCAGATTGAGAGCATATCTAAGGTTCCGGCGCGTATCGAGAAACTCATTGCTGAAAAACAGTTCTATGCAGCAATTCAGTCACTTGTTCAGTC ATCGTTGATGCTTGAACGGGAAGGCCTTCAGATGGTAGGTGCTCTTCAAGATGTAAAATCAGAGTTGTCCAAGTTGAGAGGACTGCTGTTTTACAGGATT GTGGAGGATTTACATGCACATCTTTACAATAAGGGAGAACACAGCTCAGTTGCCTCAACTATGGATGAAAGAGAAGATGAACTGCCAACCATCACTGCTA CAGCATATTCAATGAATGGATCACAATCCTTGTCTCGGAGGACCAGGATGATGAAAGGGGAACATCATGGACATATGGATGGATCTGTGAGTTCTTCATT TGAGGGACATGATGAGGATGGTTCTGAATTGCATGATGAGGCATCCTTGGATGGGCATACAGCATCAGTGAGAGGCAATGGTGGTGATGCGATCACTAAG GACCCGAAAGCTGTTTCTAGACATATACCTAGCTGGCTTTCAAACTCCACGCCTGATGAATTCATAGAAACTATAAAAAAGAGTGATGCTCCACTTCACG TAAAGTATTTGCAAACTCTGGTTGAGTGCCTCTATATGCTAGGCAAAGTAGCAGCTTCTGGTGCAATGATATGCCAAAGATTGCGCCCCACAATCCACGA TATTATCACTTCCAAGATAAAAAATTATGCTGAACTTGTAAACTCTTCAAGGTCTGGAATTGGCCAGGCTGCTGAAACTGACTCTTCTGGTCTACATTTT ATTAAAGTGCAAGTGGAAAGCTTCCAGCTGAGTAAGAAGAAGCATCAGAATGGGATATCACTTGCTGGGAGTCTACTGCAAGTGAGCCCTGTGTCGCCTG TTATGGCTCCCACAGGCAAAGCGCAGATGGCTGCAAGAGATCTTCTTGATTCAGTATTGGATACTGTTGTACGGATATTCGAAAATCATGTAATTGTCGG AGAGCTGCTGGAATCAAAATTAGTTCATAGTGTTCCCTCACATCCTCCAAGTTCACGTGCAACTAAGGCGAATTTGAATCTAGACCCAGAAGGTTCTCAG GCTGGGGGATACAGTATGGGTTTCTCCTTGACTGTTTTACAGAGTGAATGTCAACAACTTATATGTGAAATACTGCGAGCAACTCCAGAAGCTGCATCAG CAGATGCTGCTTCACAGACTGCCAGACATGCCAGCAAGGCCCCTTCCAAGGATAAACGGAATGGGTCAGAAGATGGTCTTGCATTTGCATTTCGATTCAC AGATGCTACTATCTCTGTTCCTAACCAGGGTGTTGATCTCATTCGTCAGGGGTGGAATAGGAAGGGTCCAAATGTCTCGCAAGAAGGTTATGGCTCTGCT ACTGTCTTACCTGAGCAAGGCATATATCTAGCTGCATCTATTTATCGGCCTGTGGTGCAGTTTACAGATAAGATCGCTTCTATGCTGCCACAAAAACATT CCCAGCTTGGGAATGATGGGTTGCTGGCTTTCATGGAGAATTTTATAAAGGACCATTTTCTGCCAACCATGTTTGTGGACTACCGGAAAGCGGTACAGCA AGCTATATCAAGCCCTGCTGCATTTCGTCCAAGGGCTGCAGCGGCAGCTGTTTATACTCCATCAGTGGAGAAAGGACGGCCTCTATTGCAGGGACTTTTG GCAATTGATTTATTGGCTCAAGAGGCAATTCTTGAGAAGCAAAGCTACATGCTGATTGGGAGGTATGATATAGAGAAATTGATGCGACGTGATCCTGCAA GCTCATGTTTACCTCATTCCCTTGCGCATTCAAAGTCAGACATGCCAACCAATGCTTCAGATGCTGAATCAGCTGGGATTGAGTCAGAGCTTGGTGACCT ATTACTGAATTTGCGCCCAATCAGACAGGACAATCTAATTCGCGATGATAACAAACTCATTTTGCTAGCATCACTTAGCGATTCCTTGGAGTATGTTGCA GATTCAATTGAAAGGCAAGCAGCTAGATGTTCTTCAACGCTTGGTCAGTCCAACATGCGTGCAGCAAAGCAAAAAGGCGAGAAAGGGAAGAATTTGGCTT CATTTGCAGATGACTACAGAAAATTAGCAATTGACTGTCTCAAGGTTTTGCGAGTAGAGATGCAGTTGGAGACCATATTCCATTTGCAGGAAATGACAAA TAGAGAGTACTTGGAGGATCAGGATGCAGAAGAGCCAGATGATTTTATCATCTCTCTCACTGCTCAGGTGTGGCTCTTAGCTTAA
AA sequence Show only first row Show all	>Lus10037962 pacid=23163698 polypeptide=Lus10037962 locus=Lus10037962.g ID=Lus10037962.BGIv1.0 annot-version=v1.0 MGIFDGLPVPPDKEDLRDELSKIDESWATARFDSLPHVVHILTSKDRERELHYLKEQRDIVEDVVDEVVQAYHGGFNKAIQNYSQILRLFSESSESISTL KVDLTEAKQRLGARNKQLHQLWYRSVTLRHIIALLDQIESISKVPARIEKLIAEKQFYAAIQSLVQSSLMLEREGLQMVGALQDVKSELSKLRGLLFYRI VEDLHAHLYNKGEHSSVASTMDEREDELPTITATAYSMNGSQSLSRRTRMMKGEHHGHMDGSVSSSFEGHDEDGSELHDEASLDGHTASVRGNGGDAITK DPKAVSRHIPSWLSNSTPDEFIETIKKSDAPLHVKYLQTLVECLYMLGKVAASGAMICQRLRPTIHDIITSKIKNYAELVNSSRSGIGQAAETDSSGLHF IKVQVESFQLSKKKHQNGISLAGSLLQVSPVSPVMAPTGKAQMAARDLLDSVLDTVVRIFENHVIVGELLESKLVHSVPSHPPSSRATKANLNLDPEGSQ AGGYSMGFSLTVLQSECQQLICEILRATPEAASADAASQTARHASKAPSKDKRNGSEDGLAFAFRFTDATISVPNQGVDLIRQGWNRKGPNVSQEGYGSA TVLPEQGIYLAASIYRPVVQFTDKIASMLPQKHSQLGNDGLLAFMENFIKDHFLPTMFVDYRKAVQQAISSPAAFRPRAAAAAVYTPSVEKGRPLLQGLL AIDLLAQEAILEKQSYMLIGRYDIEKLMRRDPASSCLPHSLAHSKSDMPTNASDAESAGIESELGDLLLNLRPIRQDNLIRDDNKLILLASLSDSLEYVA DSIERQAARCSSTLGQSNMRAAKQKGEKGKNLASFADDYRKLAIDCLKVLRVEMQLETIFHLQEMTNREYLEDQDAEEPDDFIISLTAQVWLLA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10037962 [exp]	0	1
AT5G54440		CLUB, AtTRS130	CLUB (.1)		Lus10021680 [exp]	1.0	0.9671
AT3G10380		SEC8, ATSEC8	subunit of exocyst complex 8 (...		Lus10038694 [exp]	1.4	0.9642
AT1G60070			Adaptor protein complex AP-1, ...		Lus10029177 [exp]	3.5	0.9544
AT3G08530			Clathrin, heavy chain (.1)		Lus10028976 [exp]	6.0	0.9499
AT4G21700			Protein of unknown function (D...		Lus10006025 [exp]	6.2	0.9243
AT3G08530			Clathrin, heavy chain (.1)		Lus10037845 [exp]	7.7	0.9462
AT2G45540			WD-40 repeat family protein / ...		Lus10015858 [exp]	8.5	0.9355
AT3G47890			Ubiquitin carboxyl-terminal hy...		Lus10042186 [exp]	10.4	0.9107
AT3G27325			hydrolases, acting on ester bo...		Lus10014564 [exp]	10.7	0.9131
AT3G08530			Clathrin, heavy chain (.1)		Lus10007499 [exp]	10.9	0.9398

Compare expression of checked genes

Lus10037962 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.