Plant FIBer expression Database

Lus10037963 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10380 174 / 3e-51 SEC8, ATSEC8 subunit of exocyst complex 8 (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038694
[exp]
236 / 3e-73 AT3G10380 1336 / 0.0 subunit of exocyst complex 8 (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G227100
[exp]
194 / 2e-58 AT3G10380 1484 / 0.0 subunit of exocyst complex 8 (.1)
Potri.008G035300
[exp]
191 / 3e-57 AT3G10380 1475 / 0.0 subunit of exocyst complex 8 (.1)
PFAM info
Representative CDS sequence
>Lus10037963 pacid=23163862 polypeptide=Lus10037963 locus=Lus10037963.g ID=Lus10037963.BGIv1.0 annot-version=v1.0
ATGGTGGAAGAAGACGAGTGTTTTGGAAAGGAAGAAGGTGAAACAATCTTGTTGTCCGTGATAACTCGCCGGGATGAGGAAATGGCGCATTTTGTTTCAC
CCGTGAAGCGAAATTACATATTTGGTGGAATATGTAGCATCGCTGCAAGTGCATCTATCAAGGTTCTTGCTGATTTGAAGTCTATCAATTTGTTTGGGGT
TCAACAGATGTGCAGAAATTCGATTGCGTTGGAGCAGGCCCTTGCAGCGATTCCATCAATCAATAGTGAAGCTGTACAGCAGAGGCTGGACCGAGCTTTG
CTTGCTTTCATCGCGGAGCATGCACGCTTGTTTACAACTGCAGAGTATGGAAATCTTTTGAAGGTGAAGGTCCCAGGAAGGGAGATACCCCCAGATGCAC
AAGCGCGAATTCGAGACGTCTTATCTCGATAG
AA sequence
>Lus10037963 pacid=23163862 polypeptide=Lus10037963 locus=Lus10037963.g ID=Lus10037963.BGIv1.0 annot-version=v1.0
MVEEDECFGKEEGETILLSVITRRDEEMAHFVSPVKRNYIFGGICSIAASASIKVLADLKSINLFGVQQMCRNSIALEQALAAIPSINSEAVQQRLDRAL
LAFIAEHARLFTTAEYGNLLKVKVPGREIPPDAQARIRDVLSR

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10380 SEC8, ATSEC8 subunit of exocyst complex 8 (... Lus10037963
[exp]
0 1
AT2G05710 ACO3 aconitase 3 (.1) Lus10040070
[exp]
9.7 0.8612
AT4G01320 ATSTE24 Peptidase family M48 family pr... Lus10018820
[exp]
21.9 0.8509
AT1G47870 E2F_DP ATE2FC, ATE2F2,... ARABIDOPSIS THALIANA HOMOLOG O... Lus10033151
[exp]
22.0 0.8537
AT5G58700 ATPLC4 phosphatidylinositol-speciwc p... Lus10018241
[exp]
24.9 0.8512
AT4G29520 unknown protein Lus10008575
[exp]
33.7 0.8285
AT5G59160 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, ty... Lus10001555
[exp]
36.1 0.8462
AT2G34260 WDR55 human WDR55 \(WD40 repeat\) ho... Lus10033342
[exp]
47.5 0.8150
AT4G34860 A/N-InvB alkaline/neutral invertase B, ... Lus10033144
[exp]
58.0 0.8347
AT2G04790 unknown protein Lus10006402
[exp]
70.0 0.8308
AT5G21930 ATHMA8, HMA8, P... ARABIDOPSIS HEAVY METAL ATPASE... Lus10038070
[exp]
84.0 0.8255

Lus10037963 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.