Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54870 920 / 0 AtKINUc, CAE1, ARK1, MRH2 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) AT1G01950 539 / 4e-175 AtKINUb, ARK2 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) AT1G12430 536 / 7e-174 AtKINUa, ARK3, PAK phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) AT3G63480 215 / 2e-60 ATP binding microtubule motor family protein (.1.2) AT2G28620 201 / 1e-52 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G17360 199 / 3e-51 POK1 phragmoplast orienting kinesin 1 (.1) AT2G37420 196 / 4e-51 ATP binding microtubule motor family protein (.1) AT1G59540 194 / 4e-51 ZCF125 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT2G36200 193 / 4e-50 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) AT3G10180 193 / 1e-49 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038696 [exp] 1905 / 0 AT1G01950 966 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10007014 [exp] 536 / 8e-174 AT1G12430 1304 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10009241 [exp] 525 / 5e-170 AT1G01950 1353 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10038007 [exp] 523 / 5e-169 AT1G01950 1272 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Lus10006670 [exp] 496 / 8e-160 AT1G12430 1143 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Lus10025304 [exp] 211 / 8e-56 AT2G37420 1244 / 0.0 ATP binding microtubule motor family protein (.1) Lus10024429 [exp] 210 / 5e-55 AT2G37420 1266 / 0.0 ATP binding microtubule motor family protein (.1) Lus10036146 [exp] 206 / 7e-54 AT3G45850 1566 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Lus10018120 [exp] 202 / 7e-53 AT3G45850 1583 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G227000 [exp] 1360 / 0 AT3G54870 938 / 0.0 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.014G070900 [exp] 543 / 5e-177 AT1G01950 1359 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.003G117000 [exp] 541 / 6e-176 AT1G12430 1348 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.001G115100 [exp] 531 / 5e-172 AT1G12430 1325 / 0.0 phosphatidic acid kinase, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, armadillo repeat kinesin 3 (.1.2) Potri.002G149400 [exp] 529 / 2e-171 AT1G01950 1360 / 0.0 Arabidopsis thaliana KINESIN Ungrouped clade, gene B, armadillo repeat kinesin 2 (.1.2.3) Potri.008G035400 [exp] 350 / 1e-112 AT3G54870 345 / 8e-113 MORPHOGENESIS OF ROOT HAIR 2, CA-ROP2 ENHANCER 1, Arabidopsis thaliana KINESIN Ungrouped clade, gene A, ARMADILLO REPEAT-CONTAINING KINESIN 1, Armadillo/beta-catenin repeat family protein / kinesin motor family protein (.1) Potri.005G038900 [exp] 210 / 1e-58 AT3G63480 533 / 0.0 ATP binding microtubule motor family protein (.1.2) Potri.006G082900 [exp] 206 / 4e-54 AT2G37420 1219 / 0.0 ATP binding microtubule motor family protein (.1) Potri.001G233700 [exp] 202 / 4e-53 AT3G45850 1554 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2) Potri.009G026000 [exp] 201 / 2e-52 AT3G45850 1520 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00225 [flax] [poplar] Kinesin Kinesin motor domain CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat
Representative CDS sequence Show only first row Show all	>Lus10037965 pacid=23163690 polypeptide=Lus10037965 locus=Lus10037965.g ID=Lus10037965.BGIv1.0 annot-version=v1.0 ATGGCTTCCAATGCCAATGACACCAGACCTTCTCCCAGACACCTTCAACAGTTCCCCACTCTTTCTCTATCCCCAGCTGTTCCTTCTTCCTCTACTTCTT CTTCTCCTGCTACTTCCCCCTCCTCTTCCACTTCTTCTTCTTCTTCCAGTTCCAGAAACGGAATATCCGGAAGCGGAGCTTCTCATAAGCCCCCGCAGCA GCATCACCAGCAGACCAGCGTTTCGGCTTTGCGGACTAAGTCTAAGGCTCCTTCTGGAGCGGCCGGCAGCCGGCGGTCCGTCACTCCTCCTACTACTTCT CATCCTCAGCGCACCGGATCCCCCTCGTCTTCTCCCCACCACAATAAAGAAAATGATTCCGGGAGAGTGAGAATTGCTGTTAGAGTACGTCCAAGGAGTG CGGAGGAGGTCCGTTCAGATGCTGATTTTCCTGATTGTGTCGAATTGCAACCAGAGCTTAAGCGATTAATATTGAGGAAAAACAACTGGAGTGCTGAGTC GTACAAATTTGATGAACTTTTTACCGAAACAGCCTCTCAAAGGCGTGTATATGAGGCCGTCGCAAAGCCTGTTGTCGAGAGTGTATTGAGTGGATACAAC GGGACAGTTATGGCTTACGGCCAAACGGGTACTGGGAAAACTTATACCATTGGCAGAATGGGGAAGGATGATGCATCTCAGCGTGGTATCATGGTTAGAT GTCTAGAGGATATTCTTTCTGGTACAACCTCTGCTTCTGATGTTGTGGAGATCTCTTATTTGCAGTTATACATGGAATCCATACAAGACTTGCTTGCACC TGAAAAGGTTAATATACATATCAATGATGACCCAAAGACCGGCGAAGTGTCAATACATGGTGCTACATTAGTTAAGCTCCGTGATCTCAATCAATTTATG GAGCTAATGCGAATTGCGGAGACAAACCGCCACGCAGCCAACACAAAGCAGAATACAGAATCTTCCCGCAGTCACGCAATTTTAGTGGTTTTTGTGCGCA GATCTGTCCCCGAGAAAGTAGAGGATGAAATTGGTACGGTCCCTGATTTACACCGAAGCAATGGCCTTCCTAGACTTCGAAAAAGCAAGATGCTAATTGT TGATCTTGCTGGTTCTGAAAGAATAGACAAATCAGGCAGTGAAGGTCGCTTGCTTGAAGAGGCGAAGTTCATTAATCTATCACTCACTTCCCTTGGGAAA TGTATAAATGCTTTGGCTGAAAACAGCCCACATATACCCACAAGGGATTCAAAGCTGACTAGATTACTTCGTGATTCTTTTGGAGGTTCTGCGAGAACTT CACTTATAGTAATGATTGGGCCATCTGCGCGGAGTCATGCAGAGACCAGTAGCACAATTATGTTTGGGCAGCGGGCGATGAAAATTGTAAACATGGTGAA GCTTAAAGAAGAATTTGATTACGAGAGCCATTCTCGGAAGCTACAGATTCAGGTAGATCAGCTTACGGCAGAAATAGAAAGGGAGCATAAATTGAGAGTT AGTGAGAGACACGAGTGTGAAAGACAAATTAAGGAATGTCGCGACTCTTTAACAAATGTTGCCACAAAGTCTGAGTTCATGGAGAAGGAAAAGACTCATA TGGAGGTGCAGTTAAAGGACATCTTAAGTGAACTGGACAGCCAAAAGGCTCAGAATTCTATCTTACGTGATCGAGTTGCACAGTTTGAAGTGAGCTTAAA GCTTAGCCAGCTTGAAAATTCCACATATCAAAAAGTGCTTGGGGAAACCACTCAGATGTACGAGGAGAAAATAGCGGAGTTTAAAGAGCAGCTAGAAAAT GAACACGCTTCTTGTGAAAATGCGGAGGAAGAGTTAAATATGATGAAGCAGCTCTTAAGTGATCGCCACACAGCAGTAAAGCAATACGAGATTGAAAGTT CTACGTATCAGAAAGCACTTACAGAAAGCACTCAGATATACGATAAGAAGGTAGAACAGTTAAATAAGCAGCTTGAAGAGGAGCGTGCTCATGCTGCCAG TTGTGTGGAACAATTAGACTTCACTAACAAGCTTCTGATCGATTGCAAAAAATCAATCCAGGTTGATACTCTTGCATCCGATTTTCTATCTAGTTTTCTT GAAGTTCTACCCCTTCCAGGTTTACTTTTCTATCTAGTTCTATGTTTAACTACTCACAAAGCTATATTCCGATTCCGTTGCAAGCAGAAGCATGAGGCAG AGAATGCTTCGTTCCAGAAAGCACTAGTAGAAACTGCACAAATGTATGAGAACAAAATAGCAGAGCTAATTGAGCAACAAGATGAAGAGAAGGCTCGTTT GGAGGAAGTAAAATCTCCCAGTGACCAGCTAAACGTAATGCAGAACGCAGTGGATATGCATAAACTGCCCAACCATCATGCAGGCATAACAACCGAACTT AAATCCTTGAAGTCTGATTACAAAGATGTGTTACAAGAAAAGGCAAGATTAGATGAAGAACTTCGTGAGGTGAAGCACAGACTAGCAATGGAAGAGGAGC AAAGGAAGAGTTTTGAACATGAACTGGCCAAAATAAAGAAGAGCGCACCTGAAATTGATGATGACTATGAGGATAAGACATCCATGAAGGAAAACATCGG TAAACCTTCTTCAGCACATAAACTTCCTGCGGGATTACACAAATCAACCCCTTTACGCGAGTCAGTATCAGGTCAGAGAGCATCAATTGCAAAGATGTGC GAGGAAGTTGGACTTCAAAAGATATTGCAACTCTTGTCATCTGATGACCCTGATGTGCAAATCCATGCTGTGAAAGTTGTCGCTAATCTTGCTTCCGAAG ATATAAATCAAGAAAAGATTGTTGAGGAAGGAGGCTTAGATGCTTTGCTCATGTTGCTAAAATCTTCACAAAATGCGACTATACTCCGAGTGGCTTCTGG TGCTATTGCCAACTTAGCCATGAATGATCTGAATCAAGGCTTAATAATGAGCAAAGGTGGTGCTGAGCTACTGGCTGACACGGCAACCAGAACAGACGAT CCTCAGACCCTTAGAATGGTAGCTGGTGCACTTGCCAACTTATGCGGAAATGAGACGTTACACTTGATGTTGATGGAAGATGGAGGCATCAAAGCTCTCC TTGGAATGGCCAAGTGTGGAAACTTGGATGTAGTAGCACAGGTCGCCAGAGGAATGGCAAATTTCGCAAAGTGCGAATCCCGAGCCACCCTTCAAGGACA CAGAAAAGGACGTTCACTCCTGATGGATCAAGGTGCCCTGGAATGGCTGATTACCAATTGCAACACAACTTCAACCTCAACCAGACGTCACGTCGAGCTT GCCCTCTGCCATTTGGCCCAAAACGAGAGCAACGTTAGAGAGTTCACGTCAATCGGAGGGTCCAGAGAACTCGTTAGAATATCAAACGAATCAGCCAGAG AAGACATTCGAAGCCTTGCAAGGAAGACGATGAAAATGCATCCACAATTATTGTAA
AA sequence Show only first row Show all	>Lus10037965 pacid=23163690 polypeptide=Lus10037965 locus=Lus10037965.g ID=Lus10037965.BGIv1.0 annot-version=v1.0 MASNANDTRPSPRHLQQFPTLSLSPAVPSSSTSSSPATSPSSSTSSSSSSSRNGISGSGASHKPPQQHHQQTSVSALRTKSKAPSGAAGSRRSVTPPTTS HPQRTGSPSSSPHHNKENDSGRVRIAVRVRPRSAEEVRSDADFPDCVELQPELKRLILRKNNWSAESYKFDELFTETASQRRVYEAVAKPVVESVLSGYN GTVMAYGQTGTGKTYTIGRMGKDDASQRGIMVRCLEDILSGTTSASDVVEISYLQLYMESIQDLLAPEKVNIHINDDPKTGEVSIHGATLVKLRDLNQFM ELMRIAETNRHAANTKQNTESSRSHAILVVFVRRSVPEKVEDEIGTVPDLHRSNGLPRLRKSKMLIVDLAGSERIDKSGSEGRLLEEAKFINLSLTSLGK CINALAENSPHIPTRDSKLTRLLRDSFGGSARTSLIVMIGPSARSHAETSSTIMFGQRAMKIVNMVKLKEEFDYESHSRKLQIQVDQLTAEIEREHKLRV SERHECERQIKECRDSLTNVATKSEFMEKEKTHMEVQLKDILSELDSQKAQNSILRDRVAQFEVSLKLSQLENSTYQKVLGETTQMYEEKIAEFKEQLEN EHASCENAEEELNMMKQLLSDRHTAVKQYEIESSTYQKALTESTQIYDKKVEQLNKQLEEERAHAASCVEQLDFTNKLLIDCKKSIQVDTLASDFLSSFL EVLPLPGLLFYLVLCLTTHKAIFRFRCKQKHEAENASFQKALVETAQMYENKIAELIEQQDEEKARLEEVKSPSDQLNVMQNAVDMHKLPNHHAGITTEL KSLKSDYKDVLQEKARLDEELREVKHRLAMEEEQRKSFEHELAKIKKSAPEIDDDYEDKTSMKENIGKPSSAHKLPAGLHKSTPLRESVSGQRASIAKMC EEVGLQKILQLLSSDDPDVQIHAVKVVANLASEDINQEKIVEEGGLDALLMLLKSSQNATILRVASGAIANLAMNDLNQGLIMSKGGAELLADTATRTDD PQTLRMVAGALANLCGNETLHLMLMEDGGIKALLGMAKCGNLDVVAQVARGMANFAKCESRATLQGHRKGRSLLMDQGALEWLITNCNTTSTSTRRHVEL ALCHLAQNESNVREFTSIGGSRELVRISNESAREDIRSLARKTMKMHPQLL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G01950		AtKINUb, ARK2	Arabidopsis thaliana KINESIN U...		Lus10037965 [exp]	0	1
AT1G68185			Ubiquitin-like superfamily pro...		Lus10035259 [exp]	2.0	0.7937
AT2G28550	AP2_ERF	TOE1, RAP2.7	TARGET OF EARLY ACTIVATION TAG...		Lus10015055 [exp]	3.9	0.8255
AT5G27670		HTA7	histone H2A 7 (.1)		Lus10029899 [exp]	4.5	0.7037
AT3G54710		ATCDT1B, CDT1B,...	ARABIDOPSIS HOMOLOG OF YEAST C...		Lus10040505 [exp]	4.6	0.8057
AT5G43900		XI-6, XI-2, ATM...	MYOSIN XI-6, MYOSIN X1 2, ARAB...		Lus10043153 [exp]	4.9	0.8246
					Lus10027520 [exp]	6.5	0.7799
AT4G21150		HAP6	HAPLESS 6, ribophorin II (RPN2...		Lus10033906 [exp]	6.9	0.7419
AT2G38910		CPK20	calcium-dependent protein kina...		Lus10012285 [exp]	7.1	0.7437
AT3G28670			oxidoreductase, zinc-binding d...		Lus10042926 [exp]	9.4	0.7429
					Lus10037909 [exp]	10.7	0.6783

Compare expression of checked genes

Lus10037965 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.