Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39140 469 / 6e-165 PDE328, SVR1 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1) AT3G43340 118 / 6e-33 Pseudouridine synthase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038697 [exp] 630 / 0 AT5G55840 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035500 [exp] 484 / 2e-171 AT2G39140 480 / 2e-169 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1) Potri.010G226901 [exp] 68 / 2e-14 AT2G39140 61 / 1e-12 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1) Potri.010G226801 [exp] 0 / 1 AT2G39140 0 / 1 SUPPRESSOR OF VARIEGATION 1, PIGMENT DEFECTIVE 328, pseudouridine synthase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0492 [flax] [poplar] S4 PF01479 [flax] [poplar] S4 S4 domain CL0649 [flax] [poplar] PseudoU_synth PF00849 [flax] [poplar] PseudoU_synth_2 RNA pseudouridylate synthase
Representative CDS sequence Show only first row Show all	>Lus10037966 pacid=23163833 polypeptide=Lus10037966 locus=Lus10037966.g ID=Lus10037966.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCAATCTCCTCCCTCCATCTCCATCACCTCATCTTCTTCTCCAAGCCATCTCCTTTTTCCTTCTCTTTTCTCAGACCTTCCCGAAAACTCC CTCACATCTCCTGCTCTTCTTCGGAATTCAATATCACCTTCGCCCCTTCGAAGCCCAAGCCCAAACCTCAGTTCAATTTCACCGACGACAGCAGCGGCCG CCAGGTTTTTGTCCCCTGGATTATCCGTGGTGAAGATGGAAACCTTCAGCTCCCCACTGAACCTCATCCTGCTCTCCTCCACGAGCTTGCTAATGCCAAC ACAGGGAAGCCTAAGAAGAAGGAGAAGCCGAAGAAGCTGCCTAGTCGACGCCCCACTGAAATATCTGCTGCTCCTACTCCTGCTCCTACTCCACCTCACT CCAAGGCTGCTCGAAGGTATTATAACGAGAATTTCAGGGACTCTGCTCAGCGTCTCAGCAAGGTTCTTGCAGCTGCCGGAGTGGCATCGAGAAGGAGCAG CGAAGAGCTAATTTTCCAAGGCAAAGTGACTGTTAATGGTTCTGTATGCAATACTCCTCAGACTCGTGTTGATCCTGCAAAAGATATGATATATGTAAAT GGAAGTCGGCTCCCCAAGAGATTGCCTCCAAAGGTGTATCTGGCCATTAACAAGCCCAAAGGGTACATTTGTTCATGTGGAGAGAAGGAGACGAAGTCCG TGATGGAACTATTTGATGATTATTTTAAGAATTGGGGGAAAATGAATCATGGAGTGCCTAAACCAAGATTGTTCACGGTGGGCCGCCTTGATGTTGCCAC AACTGGGTTGCTTATTCTGACTAATGATGGTGATTTTGCTCAAGCATTGACACATCCTTCTTTCAAGTTAACAAAAGAATATATTACAACAGTAACGGGT TCTGTTGGCAACCGCCATTTGTTGGCTATCAGTAAAGGAACATTTGTTGATGGCGTACATTGCACACCTGATTCTGTCGAGCTGTTACCACGCCAGCCAG ATATGTCAAGATTTCGACTTCGGATAGTGGTTCATGAAGGAAGGAACCACGAAGTCCGGGAGCTTGTAAAGAACGCTGGGCTTGAGGTATATGCATTGAA GCGGATACGTATTGGTGGTTACAGACTTCCAACAGATCTTGGGATTGGGAAGTATGTTGAACTGAAACATGGTGATCTGAAATCAATGGGTTGGAAAGCT TGA
AA sequence Show only first row Show all	>Lus10037966 pacid=23163833 polypeptide=Lus10037966 locus=Lus10037966.g ID=Lus10037966.BGIv1.0 annot-version=v1.0 MASSISSLHLHHLIFFSKPSPFSFSFLRPSRKLPHISCSSSEFNITFAPSKPKPKPQFNFTDDSSGRQVFVPWIIRGEDGNLQLPTEPHPALLHELANAN TGKPKKKEKPKKLPSRRPTEISAAPTPAPTPPHSKAARRYYNENFRDSAQRLSKVLAAAGVASRRSSEELIFQGKVTVNGSVCNTPQTRVDPAKDMIYVN GSRLPKRLPPKVYLAINKPKGYICSCGEKETKSVMELFDDYFKNWGKMNHGVPKPRLFTVGRLDVATTGLLILTNDGDFAQALTHPSFKLTKEYITTVTG SVGNRHLLAISKGTFVDGVHCTPDSVELLPRQPDMSRFRLRIVVHEGRNHEVRELVKNAGLEVYALKRIRIGGYRLPTDLGIGKYVELKHGDLKSMGWKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39140		PDE328, SVR1	SUPPRESSOR OF VARIEGATION 1, P...		Lus10037966 [exp]	0	1
AT5G50770		ATHSD6	hydroxysteroid dehydrogenase 6...		Lus10016748 [exp]	2.8	0.8239
AT1G12650			unknown protein		Lus10005657 [exp]	4.2	0.8235
AT2G45530			RING/U-box superfamily protein...		Lus10033252 [exp]	5.5	0.8530
AT1G73090			unknown protein		Lus10035752 [exp]	6.0	0.8122
AT3G11570		TBL8	TRICHOME BIREFRINGENCE-LIKE 8 ...		Lus10000250 [exp]	11.6	0.8207
AT1G01040		SIN1, EMB76, EM...	SHORT INTEGUMENTS 1, EMBRYO DE...		Lus10005141 [exp]	12.6	0.7839
AT5G29000	GARP	PHL1	PHR1-like 1, Homeodomain-like ...		Lus10032778 [exp]	15.2	0.7910
AT5G39030			Protein kinase superfamily pro...		Lus10027116 [exp]	16.4	0.7947
AT1G32560		AtLEA4-1	Late Embryogenesis Abundant 4-...		Lus10040088 [exp]	16.6	0.7891
AT4G34090			unknown protein		Lus10004995 [exp]	17.0	0.7631

Compare expression of checked genes

Lus10037966 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.