Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G55840 1130 / 0 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G59900 310 / 4e-90 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 293 / 3e-85 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G01110 291 / 8e-85 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G02150 290 / 5e-84 EMB2794 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G31850 296 / 6e-84 PGR3 proton gradient regulation 3 (.1) AT1G05670 277 / 1e-79 Pentatricopeptide repeat (PPR-like) superfamily protein (.1), Pentatricopeptide repeat (PPR-like) superfamily protein (.2) AT5G65560 270 / 8e-76 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61990 265 / 8e-74 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G19440 261 / 3e-73 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038697 [exp] 1000 / 0 AT5G55840 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026206 [exp] 330 / 2e-95 AT5G14770 717 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10036020 [exp] 316 / 1e-92 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012139 [exp] 297 / 3e-85 AT5G59900 987 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10003424 [exp] 297 / 1e-84 AT4G31850 1373 / 0.0 proton gradient regulation 3 (.1) Lus10008185 [exp] 296 / 1e-84 AT1G19290 864 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10010410 [exp] 286 / 2e-81 AT5G59900 998 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10007468 [exp] 281 / 3e-81 AT5G01110 808 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027974 [exp] 275 / 3e-78 AT1G19290 480 / 1e-156 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G368700 [exp] 1347 / 0 AT5G55840 1272 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G105400 [exp] 358 / 2e-106 AT5G61990 773 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.019G043101 [exp] 336 / 2e-98 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G264800 [exp] 316 / 8e-91 AT4G31850 1428 / 0.0 proton gradient regulation 3 (.1) Potri.001G236800 [exp] 310 / 7e-90 AT5G59900 1071 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.001G276500 [exp] 302 / 9e-89 AT5G01110 863 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.014G040200 [exp] 300 / 5e-86 AT1G19290 883 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G098400 [exp] 294 / 3e-85 AT2G02150 924 / 0.0 EMBRYO DEFECTIVE 2794, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.003G105700 [exp] 283 / 5e-81 AT4G19440 758 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.009G069600 [exp] 279 / 2e-80 AT4G28010 661 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10037968 pacid=23163652 polypeptide=Lus10037968 locus=Lus10037968.g ID=Lus10037968.BGIv1.0 annot-version=v1.0 ATGAAGCCTCGTCGTATTCCTTCCTTTTTCCAGACCAAAACTCCCAACATAGTTACCAACTTCAGCCGCTTCTCCCACAGGGGAGTCTCCAACTATTCAA GACTAAACTCCAAAGGTGTGGGCATGGAGAAGAGCATTTACCAGTTGCTGACAATAGATCGTTGGCAATCCCTGAATCACATGGATTACAAATTATCTTC ACTTAGGGAAGTTCATGGGAGGTTAGCTTTGAAATTTCTCAACTGGGTTATGAAGCAGTCAGGTTTGGAGCATTATCACCTTACTCATTTGTTCTCCATC ACCGCTCATGTTCTTGTTCGAGCTAGAATGCATGGACCTGCCAAATTGATTTTGAAACAACTCTCCCGCATGAGTAATTGCTCAACTTCTGTTTTTACTG CTGTCATGAACACATACCCTCTTTGCAAGTCTAACCCCTCAGTTTTTGACCTTCTCATTAAGGTCTACTTGAGGGAAGGAAATGTTGAGGCTGCTTTTGA GACGTTTTACTTGATGGGTTCTCGAGGTTTTAACGCTTCTACTCATACTTGTAATTTGCTGCTTAGTTCAATGGTAAAGGATTGGAGAGTTGGGTCAGCT TGGTTGTTTTTTCAGCGTATGCTTGCTAGGAGGATTTGCCCAGATGTTTCCACGTTTAATATATTGCTTCACCTGTTGGGGGAACAAGGAAAGATTAAGA AAGCTATACATCTTTTGAAGAAAATGGAAGAGTGTGGTTATGTTCCAAATGTAGTGACTTATAATACTATGCTCAATTGGTGCTGTAAGAAAGGAAGGTA TAGAATTGCTTTTGAATTGATGGATCAAATGGCGTCAAAAGGCATTCCAGCAGATGTGTTTACGTATAATATGCTTATTGATGATTTGTGTAGAAACAAT AAGAGTCCAAAAGCTTATATGCTGTTGAAAACCATGAGGAATAGGAATATTCCTCCTAATGAAGTTACTTATAATACTCTAATTACTGGGTTTGTGAAAG AGGGGAAGGTTGGTGTTGCCACTCAAATTTTTGACGAGATGTCAGTGCTTGGTCTTTCTTCGAATTCTCGTCCTTACAACTCTTTGATAGAGGGGCACTG TAACTTAGCGAATTTTGAAGAAGCTTTTAGACTATCGAAATTGATGGAAGCATCTGGGTTGAGACTAAGTGAAGTTAGCTATGGAACTCTCTTAAAGGGG TTGTGCAGACATAACAAACTGCACTTGGCTAGGAGCCTTCTTGAGAGAATGAGGATCGAGAAGATGGCTGGTTGTATAGCATACACAACCATGATAGATG GATTATGCCAAAATGGGTTGTTGGATGAAGCGGTGCAGTTGCTTAATAGTATGGCCAAGGACGGTGCAAATCCTGATATCATTACATTTTCTGTTCTTAT AAACGGATTTTCCCGAGTTGGAAATTTTGAAGGTGCAAAGGAAGTAGCAGGCAGAATGTATAAACTTGGAATCAAACCGAACAATGTGCTATATGCTGCT CTAATCTACCATCACTCAAGGGCAGGAAACATTACTCAGGCATTTAGGGTCTACGCAGCTATGAACTACGATGGGCATAATGCCAGCCCTTTCATATGCA ATATATTGGTCTCTTCTCTTTCTAGAAGTGGGATGTTACAAGAAGCAAAGGAGTTTATGCATCATATGCCTAGAGTTGGTATTGCTCCAAACTCTATTAC TTTTAACTCTCTTATCAATGGGTTTACTAAATCAGGTAATGCTGTTGAAGCCTTCTTGTTGTTCGATGAAATGCTTCATTCAGGTCATCACCCATGTTCT TTCACTTTTAGTAGTCTGCTTATGGGATTGTGTAAGGCTGGAAACTTAACGGAGGCAAGGAAGTTTTTGGATACACTTCACCGCATCCCATCTGCCGTTG ACACAGTAACGTATAATACAATAATTGCTGAGGCCTGCAGACTAGGTGACTTGTCAGCTGCATTGACCCTCATAAATGAAATGATGCAACACGATGTGAT ACCTGATGAGTATACATGCACCATCATCCTTACTGGGTTGAGTAGGAAAGGAAAAATGGTTGCTGCTCTTCTTTTCTATGCAAAGATGCTAGCAAAAGGA ATCATGTCCCCGAATCAAGCCATCTATACGTGCTTGATTGATGGGTTTTTCAAGGCTGGCCAACCAAAGGTAGCTTTGTATCTCTGTGAGGAGATGGAGA AGAAAGGCCCAGGTATTGATATCATTGCAACAAATGCTGTTATTGATGGATGTTCAAGGATAGGGAAAACAGCAGAAGTGAGTGATCTCTTTACAAGGCT GTTGACCAGCAGCTTCCCCCCGAGCTTGGCCACGTATAACATTGTACTACATGGCTATTCAAGGCAAAAAGATATAGTGAAATGCTCATATATTTACAAA GTCATGAGAAGGATGGATGTTTTGCCCGACAAATTAACTTGTCATTCTCTTCTACTTGGTCTTTGCGAGGCAGGTATGTTGGATGTTGGTGTTAAAATGT TAAGGAAGATGACAATGGAGGATAGTGATTTAGTTGATCGGTACATGTTTAACATGGTCATTTCACTGTGCTGTAAAATGGACAAGTTGGCAATAGCTTT TGATTTATTGGATACTATGAAATGGGTTGGAGTTACGCCTGATATCAACACCGTCAACTCTACTATTTCTGGGTTAATCAGAGCCCATGCCCTTCAGAAA TCTCATCTTCTTTTCCTGGAATTACTAGAGAATGGTGTTGTTCCTAAATGCGCACAGTATACTACCCTTATTAAGCAAATGTGCAGGATGGGAAATATTC ACAAAGCATTCAGGCTGAAAGATGAAATGGTAGCATTTGGCGTTAGTTCCCAAGATGTTGCTGAGAGTGCCATGGTTAGAGGGCTTGCAAAGTCTGGGAA GGTTGAAGAAGCAATGCTTGTTCTTGATTACATGCTTCAGAGGAAACTTGTTCCAACAATTGCCACTTTCACAACCTTGATGCACATGCTCGTTAAGAAA GACAACATTGCAGATGCCGTCAAACTGAAGAGAAAAATGGAGCACTGTGGTGTGAAACATGATGTGGTGGCGTACAATGTTCTAGTGGCAGGCCTTTGTG GAAAGGATGATATGGCAGGTGCATTTAAGCTATTTGAAGAGATGAAACAAAGGGGATTATTGCCTAATATGACAACCTATGCCATCCTCATTAAGGCCAC AATGAGAAATGAGACTGATCTTGCCAACTCTGAAATGCTTTTACGAGATTTACAGGATAGGGGAATGGTATATGGGGATTGGAGTGGAAGGATGCAACAT GGACTGTTACTAGCCATGAAAAAGTTGAAATTCATTGGGACACAGAAACAGAAAATGATGCTATCTAGTCATAAGCCCTAG
AA sequence Show only first row Show all	>Lus10037968 pacid=23163652 polypeptide=Lus10037968 locus=Lus10037968.g ID=Lus10037968.BGIv1.0 annot-version=v1.0 MKPRRIPSFFQTKTPNIVTNFSRFSHRGVSNYSRLNSKGVGMEKSIYQLLTIDRWQSLNHMDYKLSSLREVHGRLALKFLNWVMKQSGLEHYHLTHLFSI TAHVLVRARMHGPAKLILKQLSRMSNCSTSVFTAVMNTYPLCKSNPSVFDLLIKVYLREGNVEAAFETFYLMGSRGFNASTHTCNLLLSSMVKDWRVGSA WLFFQRMLARRICPDVSTFNILLHLLGEQGKIKKAIHLLKKMEECGYVPNVVTYNTMLNWCCKKGRYRIAFELMDQMASKGIPADVFTYNMLIDDLCRNN KSPKAYMLLKTMRNRNIPPNEVTYNTLITGFVKEGKVGVATQIFDEMSVLGLSSNSRPYNSLIEGHCNLANFEEAFRLSKLMEASGLRLSEVSYGTLLKG LCRHNKLHLARSLLERMRIEKMAGCIAYTTMIDGLCQNGLLDEAVQLLNSMAKDGANPDIITFSVLINGFSRVGNFEGAKEVAGRMYKLGIKPNNVLYAA LIYHHSRAGNITQAFRVYAAMNYDGHNASPFICNILVSSLSRSGMLQEAKEFMHHMPRVGIAPNSITFNSLINGFTKSGNAVEAFLLFDEMLHSGHHPCS FTFSSLLMGLCKAGNLTEARKFLDTLHRIPSAVDTVTYNTIIAEACRLGDLSAALTLINEMMQHDVIPDEYTCTIILTGLSRKGKMVAALLFYAKMLAKG IMSPNQAIYTCLIDGFFKAGQPKVALYLCEEMEKKGPGIDIIATNAVIDGCSRIGKTAEVSDLFTRLLTSSFPPSLATYNIVLHGYSRQKDIVKCSYIYK VMRRMDVLPDKLTCHSLLLGLCEAGMLDVGVKMLRKMTMEDSDLVDRYMFNMVISLCCKMDKLAIAFDLLDTMKWVGVTPDINTVNSTISGLIRAHALQK SHLLFLELLENGVVPKCAQYTTLIKQMCRMGNIHKAFRLKDEMVAFGVSSQDVAESAMVRGLAKSGKVEEAMLVLDYMLQRKLVPTIATFTTLMHMLVKK DNIADAVKLKRKMEHCGVKHDVVAYNVLVAGLCGKDDMAGAFKLFEEMKQRGLLPNMTTYAILIKATMRNETDLANSEMLLRDLQDRGMVYGDWSGRMQH GLLLAMKKLKFIGTQKQKMMLSSHKP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G55840			Pentatricopeptide repeat (PPR)...		Lus10037968 [exp]	0	1
AT5G06600		AtUBP12, UBP12	ubiquitin-specific protease 12...		Lus10043456 [exp]	2.2	0.9288
AT3G59410		ATGCN2, GCN2	ARABIDOPSIS THALIANA GENERAL C...		Lus10014896 [exp]	2.4	0.9194
AT1G58230			binding (.1)		Lus10042866 [exp]	3.2	0.9238
AT5G36930			Disease resistance protein (TI...		Lus10011741 [exp]	4.0	0.9183
AT3G58560			DNAse I-like superfamily prote...		Lus10012293 [exp]	4.1	0.8953
AT5G35930			AMP-dependent synthetase and l...		Lus10009528 [exp]	4.9	0.9096
AT5G49530			SIN-like family protein (.1)		Lus10037936 [exp]	5.0	0.9164
AT1G27170			transmembrane receptors;ATP bi...		Lus10038533 [exp]	5.5	0.8981
AT1G79190			ARM repeat superfamily protein...		Lus10022448 [exp]	5.7	0.9060
AT2G13370		CHR5	chromatin remodeling 5 (.1)		Lus10009711 [exp]	6.6	0.9015

Compare expression of checked genes

Lus10037968 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.