Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54860 620 / 0 ATVPS33 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038698 [exp] 741 / 0 AT3G54860 654 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10007300 [exp] 240 / 2e-75 AT3G54860 179 / 1e-51 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Lus10002776 [exp] 84 / 4e-18 AT3G54860 102 / 3e-25 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226600 [exp] 682 / 0 AT3G54860 929 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.008G035600 [exp] 663 / 0 AT3G54860 968 / 0.0 VACUOLAR PROTEIN SORTING 33, Sec1/munc18-like (SM) proteins superfamily (.1), Sec1/munc18-like (SM) proteins superfamily (.2) Potri.005G188000 [exp] 48 / 1e-05 AT1G77140 999 / 0.0 vacuolar protein sorting 45 (.1) Potri.002G071600 [exp] 45 / 7e-05 AT1G77140 996 / 0.0 vacuolar protein sorting 45 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00995 [flax] [poplar] Sec1 Sec1 family
Representative CDS sequence Show only first row Show all	>Lus10037969 pacid=23163761 polypeptide=Lus10037969 locus=Lus10037969.g ID=Lus10037969.BGIv1.0 annot-version=v1.0 ATGATTGATCGACGGATTGCGGTAACAGTGGTAGCTAGCGGCGGTGAGAGTGCACAATTCCCTCTGCCTTCTCTCTATCAGGAGTATGGGGTTGAACTGC GGCATCTTTCAGCTGACTCCATTCAGACGGACACCACCAAAATTGTCTACCTTGTCCGCTCTCAGTTCGAGTTGATGAAATATATCTCTTCAAATGTGCA TGATGATATATCTAAAGGACTTCAGAGAGAGTACTATGTTTATTTTGTACCTCGCAGAGAAGTTGTTTGCGAGAAGGTACTTGAGGAAGAAAAAGTTCAT CACTTGATGACCATAGGGGAATATCCATTATACATGGTTCCATTTGACGAGGATGTGATATCATTTGAACTCGATGGTGCAAACAAAGATTTCCAAGTCG ATGGTAACACGAGTTCACTTTGGCATATAGCCAAGGCAATTCATAAGCTTGAGTCCTTTTCTGGGGTGATACCCAATGTGAGGGCCAAAGGCAGATGTTC TGTACGTGTTGCCGACATCCTTAATCGCATGCAAATGGAGGAACCAGTCAACTTGCAGGATATGGGTATGCCAGAAATAAACACGGTCATCCTTCTAGAT AGGGAGAATGATAAAACATGGCTTGCTTTCTGGCTGCAGGTTGACATGGTTACGCCTATGTGTTCTCAACTAACATATGAAGGACTTATAGATGAGTTTT TCCATATAAATAATGGTTCTGTCGAGCTGGATGCTTCTATTTTGGGTGCTCAACAACAAGAAGGGAAAAAAATGAAGCATCCACTTAATTCAAGTGACAA GTTGTTCAAAGAAACTCGCGATCTCAACTTTGAAGTTGTTGTCCAGGTTCTCCGCCAAAGAGCAACCTCCATGAAGGAGGATTATGCAGAGATGACAACA ACCAATCAATCAGTTTCTGAATTGAAAGACTTTGTCAAGAAGCTCAACTCATTGCCAGAAATGACTAGGCACATAAATCTTGCTCAGCAGTTGACGACGT TCACATCTAAGCAGTCTTTTCTTGCACGACTTAACATGGAACATACAATTGTTGAGGCTGAGAGTTATGACATGCGAGAGCTACTGCATAGTTACGGATT TGAACATATAGCAACTTTGAACAATCTAGAAAAGGCTGGATTGCTTAAAAAGCAGGAATCTAGGAGCAATTGGCTAAGTATTAAGCGTGCTTTGCAACTT GTCGTGGAAGATACTGACACTGCCAACCCCAATGACATTGCATATGTCTTCTCTGGGTATGCACCATTGAGTATTCGACTAGTTCAGCATGCAATTCGAT CTGGATGGCGCCCAATGGAAGAAATCTTGCGGATGTTGCCTGGACCTCACTCGGAGATAAAGAGGGGCGGATTCCCACATAGTCAGTCTTTCGAATCAGT GTCCACAGCTTTGGGAAGGTACGCGTCGACTGATCCTACTTTCTGGTATATTTATAGCCAAGATGTGATCTTTAGAGAAACATCTGGTTCTCTGACTGTT AAGAACCCAGCTTGA
AA sequence Show only first row Show all	>Lus10037969 pacid=23163761 polypeptide=Lus10037969 locus=Lus10037969.g ID=Lus10037969.BGIv1.0 annot-version=v1.0 MIDRRIAVTVVASGGESAQFPLPSLYQEYGVELRHLSADSIQTDTTKIVYLVRSQFELMKYISSNVHDDISKGLQREYYVYFVPRREVVCEKVLEEEKVH HLMTIGEYPLYMVPFDEDVISFELDGANKDFQVDGNTSSLWHIAKAIHKLESFSGVIPNVRAKGRCSVRVADILNRMQMEEPVNLQDMGMPEINTVILLD RENDKTWLAFWLQVDMVTPMCSQLTYEGLIDEFFHINNGSVELDASILGAQQQEGKKMKHPLNSSDKLFKETRDLNFEVVVQVLRQRATSMKEDYAEMTT TNQSVSELKDFVKKLNSLPEMTRHINLAQQLTTFTSKQSFLARLNMEHTIVEAESYDMRELLHSYGFEHIATLNNLEKAGLLKKQESRSNWLSIKRALQL VVEDTDTANPNDIAYVFSGYAPLSIRLVQHAIRSGWRPMEEILRMLPGPHSEIKRGGFPHSQSFESVSTALGRYASTDPTFWYIYSQDVIFRETSGSLTV KNPA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10037969 [exp]	0	1
AT3G54860		ATVPS33	VACUOLAR PROTEIN SORTING 33, S...		Lus10038698 [exp]	1.7	0.7899
AT1G16570			UDP-Glycosyltransferase superf...		Lus10026065 [exp]	2.8	0.8067
AT4G18060			SH3 domain-containing protein ...		Lus10011975 [exp]	5.3	0.7731
AT1G02410			cytochrome c oxidase assembly ...		Lus10031633 [exp]	5.7	0.7550
AT1G02145		EBS4, ALG12	EMS-MUTAGENIZED BRI1\(BRASSINO...		Lus10043256 [exp]	6.7	0.7487
AT5G41790		CIP1	COP1-interactive protein 1 (.1...		Lus10032362 [exp]	7.5	0.7442
AT5G17620			unknown protein		Lus10013643 [exp]	8.6	0.8045
AT4G35140			Transducin/WD40 repeat-like su...		Lus10023993 [exp]	10.0	0.7677
AT3G24150			unknown protein		Lus10019404 [exp]	12.2	0.7798
AT3G45900			Ribonuclease P protein subunit...		Lus10033275 [exp]	12.3	0.7709

Compare expression of checked genes

Lus10037969 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.