Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G54850 793 / 0 ATPUB14 plant U-box 14 (.1) AT3G46510 640 / 0 ATPUB13 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) AT2G28830 555 / 0 AtPUB12 PLANT U-BOX 12 (.1) AT5G42340 433 / 5e-144 PUB15 Plant U-Box 15 (.1) AT1G71020 428 / 2e-142 ARM repeat superfamily protein (.1.2) AT1G23030 421 / 4e-140 PUB11 ARM repeat superfamily protein (.1) AT1G29340 284 / 4e-86 ATPUB17, PUB17 ARABIDOPSIS THALIANA PLANT U-BOX 17, plant U-box 17 (.1) AT3G07360 253 / 2e-77 ATPUB9 ARABIDOPSIS THALIANA PLANT U-BOX 9, plant U-box 9 (.1.2.3) AT2G23140 238 / 2e-68 RING/U-box superfamily protein with ARM repeat domain (.1.2) AT5G01830 232 / 2e-67 ARM repeat superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038699 [exp] 738 / 0 AT3G54850 599 / 0.0 plant U-box 14 (.1) Lus10040834 [exp] 670 / 0 AT3G46510 879 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10016565 [exp] 668 / 0 AT3G46510 884 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Lus10012260 [exp] 443 / 7e-148 AT5G42340 695 / 0.0 Plant U-Box 15 (.1) Lus10043471 [exp] 440 / 4e-147 AT1G71020 682 / 0.0 ARM repeat superfamily protein (.1.2) Lus10016016 [exp] 441 / 5e-147 AT5G42340 702 / 0.0 Plant U-Box 15 (.1) Lus10033249 [exp] 418 / 1e-143 AT3G54850 340 / 3e-113 plant U-box 14 (.1) Lus10034113 [exp] 425 / 2e-131 AT3G59770 1913 / 0.0 ARABIDOPSIS THALIANA SUPPRESSOR OF ACTIN 9, sacI homology domain-containing protein / WW domain-containing protein (.1.2.3) Lus10007511 [exp] 374 / 9e-121 AT3G46510 397 / 2e-129 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035700 [exp] 924 / 0 AT3G54850 821 / 0.0 plant U-box 14 (.1) Potri.010G226500 [exp] 919 / 0 AT3G54850 806 / 0.0 plant U-box 14 (.1) Potri.009G029600 [exp] 688 / 0 AT3G46510 935 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.001G238500 [exp] 676 / 0 AT3G46510 912 / 0.0 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1) Potri.002G009900 [exp] 479 / 5e-162 AT5G42340 763 / 0.0 Plant U-Box 15 (.1) Potri.010G113900 [exp] 457 / 7e-154 AT1G23030 732 / 0.0 ARM repeat superfamily protein (.1) Potri.009G165900 [exp] 447 / 2e-149 AT5G42340 671 / 0.0 Plant U-Box 15 (.1) Potri.008G128600 [exp] 445 / 5e-149 AT1G23030 697 / 0.0 ARM repeat superfamily protein (.1) Potri.004G205000 [exp] 434 / 7e-145 AT5G42340 654 / 0.0 Plant U-Box 15 (.1) Potri.008G071600 [exp] 340 / 1e-107 AT3G46510 345 / 2e-109 ARABIDOPSIS THALIANA PLANT U-BOX 13, plant U-box 13 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00514 [flax] [poplar] Arm Armadillo/beta-catenin-like repeat CL0229 [flax] [poplar] RING PF04564 [flax] [poplar] U-box U-box domain
Representative CDS sequence Show only first row Show all	>Lus10037970 pacid=23163822 polypeptide=Lus10037970 locus=Lus10037970.g ID=Lus10037970.BGIv1.0 annot-version=v1.0 ATGGATGACACCAAAGACGTGGGGTTGGTGACTGGACTGATGGAGTTGGTGAAGGAGATTTCCGGGTTGTCCGAGTGTAGAAATGTTTGCAAGAAGATGC AAGGCAATTTGGTGAGGAGAATTAAGCTGTTGAGTCCCATGTTTGAGGAATTGAAGGATGGTAATGAAGGACGGCTTACCAAGGAAGCCGCTAAAGGGTT TCAACTGTTGAGAGCTGCTCTCGATTCAGCTTTGGACCATCTGAGAACCGTCAATGAAGGGAGCAAGGTTTACCAGGCCTTGTATCTAGACAGCATTGCA GTTGAGTTTCACCAGATTACAGAACAAATTGAAGCAGCACTGAGCAACATTTCTTACAACAAGCTTGATTTGTCGGAGGAAGTGCGGGAACAGATTGAGC TAGTGCATGTTCAATTCAAACGAGCAACAGCAAGACCAGATTCTCCTGATGTACAACTGGATCATGATTTAGTTGTTGCACAAAGAGACAAAGATCTCGA CCCTGCTGTACTGAGGAGGCTTTCGGAAAAGCTTCAACTCAAGACGATTGATGATCTTAAAAAAGAGTCTGTTGCATTCCAGGAGCTAGTAATTTCAAGT GAGGGAGATCCTGGAGACTGGTTCGACAAGATTTCTTCCCTTCTTCGAAAGCTGACCATCTTTGTTCAAGTGGAGAACCCAGAAGTTGATGCTCCTGATG CTGAGAAAGGATTCATTAAGCACAGATCTCCTGTTATACCCGATGATTTCCGATGTCCCATTTCTCTTGAACTGATGAAAGATCCTGTTATTGTCTCTAC TGGACAGACGTATGAAAGATCTTGCATTCAGAAATGGCTAGATGCTGGGCACAAGACATGTCCGAAGACCCAGCAAACACTCCTGCACACTGCACTTACT CCTAACTATGTTTTGAAGAGTTTGATATCCCTTTGGTGTGAAAGCAATGGTGTTGAACTACCTAAGCATCAAGCTGCTTATAGAAACAGAAAGCTGGGGA GCGGTGTCTCAGATTGTGATCAAACAACCATTCTTGGTTTATTAGAGAAATTGGCGAATGACAATCCAGAACAGCAGAGAGCTGCAGCTGGAGAGTTCCG TTTGCTAGCAAAGAGAAATGCAGACAACAGAGTATGCATTGCTGAAGCAGGAGCCATTCCACTCCTTGTCGAGTTATTGTCGTCTCCAGATTCCCGCACA CAAGAGCATGCTGTCACAGCACTTCTGAATCTCTCGATTAATGACGCAAACAAGGGGATTATTGTCAACGCAGGAGCTATACCCGATATCGTAGATGTTC TTAAAACTGGAAGCATGGAAGCCAGGGAAAATGCAGCAGCTACCCTTTTTAGTCTATCTGTCATAGATGAGAACAAGGTGGCAATAGGAGCAGCTGGAGC CATCCCAGCATTAATCAACTTGCTCTGCAAGGGTTCTCCGCGAGGAAAGAAAGATGCTGCAACTGCTATATTCAATCTTTCAATATACCAGGGAAATAAA GCAAGAGCTGTAAGAGCTGGTATTGTACCACCCTTAATGAGACTGTTAAAGGATGCTGGTTGTGGGATGGTGGATGAAGCATTGGCAATCCTCGCTATTC TCGCAAGCCATCAGGAAGGAAAGGCTGCTATTAGTTTGGCTGATCCAGTTCCTGCGCTGCTGGACGTCATCAGGACTGGTTCTCCTCGCAACCGAGAGAA TTCAGCTGCTGTACTGTGGTCATTATGCACTGGGGATTTGCAGCAGTTGAAGGTAGCCAAGGAGTTGGGTGCAGAAGACGCATTGAATGAACTGTCAGAG AGTGGTACTGACAGAGCGAAACGTAAAGCTGCAAGCATATTGGAGCTGCTTCAGCGGGTCGTCGACCCAGTTGCCTAA
AA sequence Show only first row Show all	>Lus10037970 pacid=23163822 polypeptide=Lus10037970 locus=Lus10037970.g ID=Lus10037970.BGIv1.0 annot-version=v1.0 MDDTKDVGLVTGLMELVKEISGLSECRNVCKKMQGNLVRRIKLLSPMFEELKDGNEGRLTKEAAKGFQLLRAALDSALDHLRTVNEGSKVYQALYLDSIA VEFHQITEQIEAALSNISYNKLDLSEEVREQIELVHVQFKRATARPDSPDVQLDHDLVVAQRDKDLDPAVLRRLSEKLQLKTIDDLKKESVAFQELVISS EGDPGDWFDKISSLLRKLTIFVQVENPEVDAPDAEKGFIKHRSPVIPDDFRCPISLELMKDPVIVSTGQTYERSCIQKWLDAGHKTCPKTQQTLLHTALT PNYVLKSLISLWCESNGVELPKHQAAYRNRKLGSGVSDCDQTTILGLLEKLANDNPEQQRAAAGEFRLLAKRNADNRVCIAEAGAIPLLVELLSSPDSRT QEHAVTALLNLSINDANKGIIVNAGAIPDIVDVLKTGSMEARENAAATLFSLSVIDENKVAIGAAGAIPALINLLCKGSPRGKKDAATAIFNLSIYQGNK ARAVRAGIVPPLMRLLKDAGCGMVDEALAILAILASHQEGKAAISLADPVPALLDVIRTGSPRNRENSAAVLWSLCTGDLQQLKVAKELGAEDALNELSE SGTDRAKRKAASILELLQRVVDPVA

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G54850		ATPUB14	plant U-box 14 (.1)		Lus10037970 [exp]	0	1
AT5G57190		PSD2	phosphatidylserine decarboxyla...		Lus10035633 [exp]	3.5	0.9445
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10033365 [exp]	4.8	0.9516
AT1G67940		ABCI17, AtSTAR1...	ARABIDOPSIS THALIANA NON-INTRI...		Lus10031069 [exp]	9.2	0.9398
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10033392 [exp]	9.9	0.9275
AT5G13750		ZIFL1	zinc induced facilitator-like ...		Lus10034847 [exp]	12.7	0.9437
AT2G37130			Peroxidase superfamily protein...		Lus10015074 [exp]	13.4	0.9300
AT1G72890			Disease resistance protein (TI...		Lus10006929 [exp]	13.6	0.9370
AT5G02230			Haloacid dehalogenase-like hyd...		Lus10024382 [exp]	17.2	0.9072
AT5G63970			Copine (Calcium-dependent phos...		Lus10020885 [exp]	19.6	0.9298
AT3G14470			NB-ARC domain-containing disea...		Lus10011278 [exp]	19.6	0.9334

Compare expression of checked genes

Lus10037970 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.