Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04040 468 / 5e-161 MEE51 maternal effect embryo arrest 51, Phosphofructokinase family protein (.1) AT1G12000 466 / 2e-160 Phosphofructokinase family protein (.1) AT1G20950 208 / 2e-60 Phosphofructokinase family protein (.1) AT1G76550 206 / 1e-59 Phosphofructokinase family protein (.1) AT5G56630 64 / 1e-10 PFK7 phosphofructokinase 7 (.1) AT4G26270 59 / 3e-09 PFK3 phosphofructokinase 3 (.1) AT5G47810 55 / 6e-08 PFK2 phosphofructokinase 2 (.1) AT4G32840 53 / 3e-07 PFK6 phosphofructokinase 6 (.1) AT4G29220 52 / 4e-07 PFK1 phosphofructokinase 1 (.1) AT5G61580 51 / 2e-06 PFK4 phosphofructokinase 4 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038700 [exp] 932 / 0 AT1G12000 875 / 0.0 Phosphofructokinase family protein (.1) Lus10025167 [exp] 203 / 3e-58 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10016047 [exp] 202 / 6e-58 AT1G20950 1075 / 0.0 Phosphofructokinase family protein (.1) Lus10005488 [exp] 64 / 2e-10 AT4G32840 765 / 0.0 phosphofructokinase 6 (.1) Lus10011143 [exp] 62 / 7e-10 AT4G26270 837 / 0.0 phosphofructokinase 3 (.1) Lus10043044 [exp] 62 / 8e-10 AT4G26270 840 / 0.0 phosphofructokinase 3 (.1) Lus10006032 [exp] 61 / 9e-10 AT4G26270 742 / 0.0 phosphofructokinase 3 (.1) Lus10035001 [exp] 59 / 4e-09 AT4G26270 812 / 0.0 phosphofructokinase 3 (.1) Lus10008812 [exp] 57 / 3e-08 AT5G47810 697 / 0.0 phosphofructokinase 2 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G015900 [exp] 506 / 5e-176 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.006G281900 [exp] 506 / 5e-176 AT1G12000 960 / 0.0 Phosphofructokinase family protein (.1) Potri.004G003800 [exp] 492 / 1e-170 AT1G12000 946 / 0.0 Phosphofructokinase family protein (.1) Potri.011G015600 [exp] 345 / 7e-116 AT1G12000 637 / 0.0 Phosphofructokinase family protein (.1) Potri.005G257800 [exp] 206 / 1e-59 AT1G76550 1065 / 0.0 Phosphofructokinase family protein (.1) Potri.002G003100 [exp] 206 / 1e-59 AT1G76550 1034 / 0.0 Phosphofructokinase family protein (.1) Potri.016G002700 [exp] 64 / 1e-10 AT5G47810 643 / 0.0 phosphofructokinase 2 (.1) Potri.006G152600 [exp] 60 / 2e-09 AT4G26270 827 / 0.0 phosphofructokinase 3 (.1) Potri.018G069200 [exp] 59 / 4e-09 AT4G26270 808 / 0.0 phosphofructokinase 3 (.1) Potri.003G151100 [exp] 54 / 1e-07 AT5G61580 797 / 0.0 phosphofructokinase 4 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0240 [flax] [poplar] PFK PF00365 [flax] [poplar] PFK Phosphofructokinase
Representative CDS sequence Show only first row Show all	>Lus10037972 pacid=23163685 polypeptide=Lus10037972 locus=Lus10037972.g ID=Lus10037972.BGIv1.0 annot-version=v1.0 ATGGCTCCGTCCTTTGTAATTAACGGCGACTTCTCCGCCACCACCAACTCCTCCAACTCCACTGGTCGCGTCTCCTCCGTTTACAGCGACGTCCAGACCA GCCGAATCGACTATCAACTCCCACTCCCCTCCGTCCTCACTGCTCCATTCAAGATCGTCGATGGTCCCCCTAGCTCCGCCGCCGGAAACCCTGATGAGAT CTCAAAGCTGTTCCCAAATCTGTTCGGCCAACCTTCTTCAATGCTGGTTCCAAATGACGTTCATACTCTCCCTTCTGATCGTAAACTTAAAATCGGCGTC GTTTTGTCTGGAGGCCAGGCACCAGGAGGACACAATGTCATCTCTGGCATCTTTGATTACTTGCAGGCTCATGCTAAGGGAAGTACACTATATGGCTTTC GTGGAGGTCCTGCGGGCATTATGAAGTGCAAATATGTGGAACTGAATCCTGACTTCATTCGTCCTTACAGGAATCAGGGTGGTTTTGATATGATCTGCAG TGGCAGGGACAAAATTGAGACACCTGAGCAGTTTAAGCAAGCTGAAGAAACTGCATTGACGCTTGATTTGGATGGGATTGTTGTTATTGGCGGGGATGAT TCAAACACAAATGCTTGCCTGCTTGCTGAAAACTTCAGGAGCAAGAATATGAAGGCGAGGGTAATTGGATGTCCGAAAACCATCGATGGTGATCTGAAAT GCAAAGAGGTCCCTGTTAGTTTTGGATTTGATACTGCTTGCAAGATTTATGCTGAGATGATTGGGAACGTGATGATTGATGCTCGATCTACGGGGAAGTA TTATCATTTTGTAAGGCTTATGGGTCGTGCTGCTTCCCACATTACCTTGGAATGTGCATTGCAAACTCACCCTAACATAACCATCATTGGAGAAGAGGAG CAATTGATGCTTGAGAGAGATCCACATGGAAATGTTCAGGTTGCCAAGATTGAGACAGAAAAAATGCTCATTCAGATGGTTGAAACCGAGTTACAGAAGA GGAACCTAGAAGGTTCCTACAAAGGCCAATTCAAAGGACAGTCCCACTTCTTTGGATATGAAGGAAGATGTGGCTTGCCAACAAATTTTGATTCTATGTA CTGCTACGCTCTGGGCTATGCCGCAGCAGTACTTCTTCACAGTGGGAAGACTGGATTGATATCATCAATTGGAAACCTCGGTGCCCCCATATCAGAATGG ACAGTGGGCGGGACTGCATTGACTTCGTTGATGGATGTGGAGAGGAGACATGGTAAATTCAAGGCCGTCATTAAGAAGGCAATGGTAGAACTTGAAGGGG CGCCTTTCAAAAAGTTTGCTTCACTGCGGGATGAGTGGGCACTCAAGAACAGATACACAAGTCCTGGACCAATTCAGTTCATGGGTCCTGGGGCTGATGC TGTGAATCACACCCTACTCTTGGAACTTGGACTCATTGCTTAA
AA sequence Show only first row Show all	>Lus10037972 pacid=23163685 polypeptide=Lus10037972 locus=Lus10037972.g ID=Lus10037972.BGIv1.0 annot-version=v1.0 MAPSFVINGDFSATTNSSNSTGRVSSVYSDVQTSRIDYQLPLPSVLTAPFKIVDGPPSSAAGNPDEISKLFPNLFGQPSSMLVPNDVHTLPSDRKLKIGV VLSGGQAPGGHNVISGIFDYLQAHAKGSTLYGFRGGPAGIMKCKYVELNPDFIRPYRNQGGFDMICSGRDKIETPEQFKQAEETALTLDLDGIVVIGGDD SNTNACLLAENFRSKNMKARVIGCPKTIDGDLKCKEVPVSFGFDTACKIYAEMIGNVMIDARSTGKYYHFVRLMGRAASHITLECALQTHPNITIIGEEE QLMLERDPHGNVQVAKIETEKMLIQMVETELQKRNLEGSYKGQFKGQSHFFGYEGRCGLPTNFDSMYCYALGYAAAVLLHSGKTGLISSIGNLGAPISEW TVGGTALTSLMDVERRHGKFKAVIKKAMVELEGAPFKKFASLRDEWALKNRYTSPGPIQFMGPGADAVNHTLLLELGLIA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G04040		MEE51	maternal effect embryo arrest ...		Lus10037972 [exp]	0	1
AT1G12000			Phosphofructokinase family pro...		Lus10038700 [exp]	1.0	0.9655
AT5G33320		ARAPPT, CUE1	PHOSPHOENOLPYRUVATE/PHOSPHATE ...		Lus10002385 [exp]	2.6	0.8963
AT3G63210		MARD1	MEDIATOR OF ABA-REGULATED DORM...		Lus10022073 [exp]	3.2	0.8975
AT3G17440		ATNPSN13, NPSN1...	novel plant snare 13 (.1.2)		Lus10018338 [exp]	3.2	0.9276
AT1G30630			Coatomer epsilon subunit (.1)		Lus10038422 [exp]	3.5	0.9151
AT1G60810		ACLA-2	ATP-citrate lyase A-2 (.1)		Lus10013032 [exp]	4.0	0.9006
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10016910 [exp]	9.5	0.8857
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Lus10037770 [exp]	11.0	0.8892
AT5G11710			ENTH/VHS family protein (.1)		Lus10005498 [exp]	14.0	0.8781
AT3G12110		ACT11	actin-11 (.1)		Lus10004956 [exp]	14.7	0.8966

Compare expression of checked genes

Lus10037972 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.