Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04270 207 / 1e-66 DHHC-type zinc finger family protein (.1) AT3G09320 174 / 5e-53 DHHC-type zinc finger family protein (.1) AT4G22753 48 / 4e-06 ATSMO1-3, ATSMO1, SMO1-3 sterol 4-alpha methyl oxidase 1-3 (.1.2) AT4G22750 47 / 7e-06 DHHC-type zinc finger family protein (.1.2) AT4G01730 42 / 0.0003 DHHC-type zinc finger family protein (.1) AT5G50020 41 / 0.0005 DHHC-type zinc finger family protein (.1.2) AT5G41060 41 / 0.0006 DHHC-type zinc finger family protein (.1.2) AT1G69420 41 / 0.0006 DHHC-type zinc finger family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038701 [exp] 402 / 7e-143 AT5G04270 298 / 2e-102 DHHC-type zinc finger family protein (.1) Lus10024377 [exp] 179 / 4e-55 AT3G09320 426 / 9e-152 DHHC-type zinc finger family protein (.1) Lus10010852 [exp] 177 / 3e-54 AT3G09320 418 / 6e-149 DHHC-type zinc finger family protein (.1) Lus10033700 [exp] 86 / 5e-19 AT1G65680 233 / 2e-75 expansin B2 (.1) Lus10038029 [exp] 50 / 6e-07 AT4G01730 515 / 4e-180 DHHC-type zinc finger family protein (.1) Lus10028737 [exp] 46 / 2e-05 AT4G24630 582 / 0.0 DHHC-type zinc finger family protein (.1) Lus10028687 [exp] 44 / 6e-05 AT4G24630 563 / 0.0 DHHC-type zinc finger family protein (.1) Lus10012455 [exp] 44 / 8e-05 AT2G14255 597 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Lus10037133 [exp] 42 / 0.0004 AT1G69420 684 / 0.0 DHHC-type zinc finger family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G226100 [exp] 303 / 8e-104 AT5G04270 296 / 3e-101 DHHC-type zinc finger family protein (.1) Potri.006G087400 [exp] 180 / 2e-55 AT3G09320 409 / 3e-145 DHHC-type zinc finger family protein (.1) Potri.016G100200 [exp] 177 / 2e-54 AT3G09320 426 / 5e-152 DHHC-type zinc finger family protein (.1) Potri.002G186800 [exp] 53 / 9e-08 AT4G01730 520 / 0.0 DHHC-type zinc finger family protein (.1) Potri.014G112000 [exp] 49 / 2e-06 AT4G01730 526 / 0.0 DHHC-type zinc finger family protein (.1) Potri.005G195300 [exp] 45 / 3e-05 AT4G24630 555 / 0.0 DHHC-type zinc finger family protein (.1) Potri.001G287000 [exp] 44 / 5e-05 AT2G14255 671 / 0.0 Ankyrin repeat family protein with DHHC zinc finger domain (.1) Potri.002G065500 [exp] 42 / 0.0002 AT4G24630 543 / 0.0 DHHC-type zinc finger family protein (.1) Potri.003G160600 [exp] 42 / 0.0002 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1) Potri.001G070100 [exp] 42 / 0.0003 AT3G26935 435 / 1e-150 DHHC-type zinc finger family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01529 [flax] [poplar] DHHC DHHC palmitoyltransferase
Representative CDS sequence Show only first row Show all	>Lus10037973 pacid=23163732 polypeptide=Lus10037973 locus=Lus10037973.g ID=Lus10037973.BGIv1.0 annot-version=v1.0 ATGAGGTGGAAGAGATTTGCGACGATCCCAGCATGCAGTGTGGTGATGCTAATCGGTTTAATTTACTACATCACAGTCTTCATCTTCATTGACGATTGGG TCGGGTTACCGAGCTCAGCTGGGACTCTGAACGCCTTGATCTTCACTTCCATGGCCTCTCTCTGCCTTTTCTCTTATGCTGCTTCTGTTCTAACTTCTTA TGTTCCTGATGTCGAAGGACTTCTTCTCTTATGGATCCGGACATCCAAAAGGATAGTTCACGACAGAGGCAATGTGGATCGTCATTGTTTGTGGATAAAC AATTGTGTTGGTTACTGGAACTATAAGGCCTTCTTCGTTTTGGTGTTCCATGCAACTGCAGCTAGCATCTATTCTCTGGTTGTGATACTGAATTGTTCAA CGCACAAGGATTGGGATATTGAAGGGCGGCTCCACTTCAAAATTTACTATTGTGCTGACTGTAAAATGTTTAATATTGGCCGTGTGACTTGGACTCTTTC CGGGATATTAATGGCTGGCATGAGCATAACACTTGGGACTCTGCTGGGCTGGCATATTTACCTTATTGCTCGTAATATGACTACCATAGAGTTACTATGT AAACATTCTCAGTATCATGAAGCAACGAGAGCAGCTTGGTTGGCCAAGAAATCTGGCCAGATTTATCGACATCCGTTCAACATCAGTGTCTATGGAAACA TTTCCTCGGTTTTGGGTCCAAACATGCTAAAGTGGTTTTGTCCCACGGCAGTTGGCCACCTGAAAGATGGAACGCATTTCCCTACTTCACACCAGAGTTA G
AA sequence Show only first row Show all	>Lus10037973 pacid=23163732 polypeptide=Lus10037973 locus=Lus10037973.g ID=Lus10037973.BGIv1.0 annot-version=v1.0 MRWKRFATIPACSVVMLIGLIYYITVFIFIDDWVGLPSSAGTLNALIFTSMASLCLFSYAASVLTSYVPDVEGLLLLWIRTSKRIVHDRGNVDRHCLWIN NCVGYWNYKAFFVLVFHATAASIYSLVVILNCSTHKDWDIEGRLHFKIYYCADCKMFNIGRVTWTLSGILMAGMSITLGTLLGWHIYLIARNMTTIELLC KHSQYHEATRAAWLAKKSGQIYRHPFNISVYGNISSVLGPNMLKWFCPTAVGHLKDGTHFPTSHQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04270			DHHC-type zinc finger family p...		Lus10037973 [exp]	0	1
AT5G56090		COX15	cytochrome c oxidase 15 (.1)		Lus10034065 [exp]	3.7	0.7055
AT3G55590			Glucose-1-phosphate adenylyltr...		Lus10014608 [exp]	9.1	0.7075
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	9.2	0.7020
AT2G27790			RNA-binding (RRM/RBD/RNP motif...		Lus10030598 [exp]	24.7	0.6752
AT1G22460			O-fucosyltransferase family pr...		Lus10033494 [exp]	27.0	0.6505
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	32.7	0.6796
AT2G19560		ESSP1, AtTHP1, ...	ectopic expression of seed sto...		Lus10032680 [exp]	38.7	0.6664
AT5G59980			Polymerase/histidinol phosphat...		Lus10042842 [exp]	40.9	0.6750
AT5G21090			Leucine-rich repeat (LRR) fami...		Lus10001807 [exp]	50.7	0.6604
AT3G25400			unknown protein		Lus10003475 [exp]	57.4	0.6207

Compare expression of checked genes

Lus10037973 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.