Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G10360 926 / 0 APUM4 pumilio 4 (.1) AT2G29200 748 / 0 APUM1 pumilio 1 (.1) AT2G29190 743 / 0 APUM2 pumilio 2 (.1.2) AT2G29140 732 / 0 APUM3 pumilio 3 (.1) AT3G20250 472 / 1e-150 APUM5 pumilio 5 (.1) AT4G25880 429 / 1e-135 APUM6 pumilio 6 (.1.2.3) AT1G22240 187 / 1e-50 APUM8 pumilio 8 (.1) AT1G78160 188 / 4e-50 APUM7 pumilio 7 (.1) AT5G56510 179 / 4e-47 APUM12 pumilio 12 (.1) AT4G08840 169 / 3e-44 APUM11 pumilio 11 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038706 [exp] 1833 / 0 AT3G10360 928 / 0.0 pumilio 4 (.1) Lus10002708 [exp] 805 / 0 AT2G29200 1009 / 0.0 pumilio 1 (.1) Lus10001567 [exp] 719 / 0 AT2G29200 977 / 0.0 pumilio 1 (.1) Lus10004976 [exp] 703 / 0 AT2G29200 971 / 0.0 pumilio 1 (.1) Lus10016513 [exp] 631 / 0 AT2G29190 1083 / 0.0 pumilio 2 (.1.2) Lus10040782 [exp] 612 / 0 AT2G29190 1095 / 0.0 pumilio 2 (.1.2) Lus10000516 [exp] 598 / 0 AT2G29200 638 / 0.0 pumilio 1 (.1) Lus10034808 [exp] 466 / 5e-148 AT3G20250 880 / 0.0 pumilio 5 (.1) Lus10033353 [exp] 462 / 2e-147 AT3G20250 732 / 0.0 pumilio 5 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036500 [exp] 1162 / 0 AT3G10360 907 / 0.0 pumilio 4 (.1) Potri.010G225600 [exp] 1087 / 0 AT3G10360 868 / 0.0 pumilio 4 (.1) Potri.008G058300 [exp] 799 / 0 AT2G29200 863 / 0.0 pumilio 1 (.1) Potri.010G201100 [exp] 671 / 0 AT2G29200 923 / 0.0 pumilio 1 (.1) Potri.009G034900 [exp] 652 / 0 AT2G29190 1055 / 0.0 pumilio 2 (.1.2) Potri.001G243400 [exp] 644 / 0 AT2G29190 1071 / 0.0 pumilio 2 (.1.2) Potri.008G004300 [exp] 493 / 1e-158 AT3G20250 783 / 0.0 pumilio 5 (.1) Potri.006G165100 [exp] 472 / 1e-150 AT4G25880 742 / 0.0 pumilio 6 (.1.2.3) Potri.003G009900 [exp] 457 / 5e-145 AT4G25880 725 / 0.0 pumilio 6 (.1.2.3) Potri.003G222300 [exp] 219 / 7e-60 AT5G56510 497 / 4e-168 pumilio 12 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF00806 [flax] [poplar] PUF Pumilio-family RNA binding repeat CL0020 [flax] [poplar] PF07990 [flax] [poplar] NABP Nucleic acid binding protein NABP
Representative CDS sequence Show only first row Show all	>Lus10037976 pacid=23163679 polypeptide=Lus10037976 locus=Lus10037976.g ID=Lus10037976.BGIv1.0 annot-version=v1.0 ATGGCCTCTGTGAGCAACATAGACATGATGCCGACCTTAGATGATCGTCTGCAAGAAGGCAATGGGAGTTTGGAGCAAAGGTTACAGAGTGAGCTAGACC TTATGCTTCGAGCCCAGCGTAACCAACGCATGGTTGATCGAGACATGGATCAAAACATATACAGGAGTGGCAGTGCGCCACCAACAGTCGAGGGGTCGTT GCGTGCAGTGGGGAGCCTTTTCCAGAATCCCAGTTTCAATGGCGTTGCTACTAATGGTTTTGGTAACGGTAACACTAGTACTAATAATAATGCTATGATG ACTGAAGATGAAATCAGGTTGCACCCTGCCTATCTTTCCTACTACTATTCGAATGACAACATAAATCCTAGACTGCCTCCTCCCTTGCTGTCGAAAGAGG ATTGGCGTGTTGCGCAGCGCTTCCAGGCTGGTGGATCTTCCTTTGGAGGCATTGGAGACTTGAGGAAAAAGAAGCTTGTTGACAATGGTGATAGTTCCTC TCTGTTCTCTATGCAACCTGGACTTTCAGCACATGATGCCGAAAAGGAACTAATGGAGTTGAGAAATGGTAGCAGAAGAAATTTCTCCAGGCAAACTATG GGTGTATGGCCAGATAGCAACGCAGATGGTCTCATTGGATTGCAAGGCTCTGGGATTGGGGCAAGGAGGAAGAGCTTTGCTGACATTCTTCAGGAGGGAC TTGATCAGTCAGTTTCCATGGGAGGCCAGTTGTCACGACCTGCTAGTCATAATGCATTGTCTAATCCAGTTGCAGTACTCGGGTTGCCAAATGGAATGGA ATCGATCGACAGTTTGAAAGCAGGAGCAGCTCCTCCTGGATTTGGTGGCGCTAGTGTTTCTCATTCCTTTGCATCTGCTGTTGGTTCATCATTATCAAGA AGCACAACCCCTGAGCAGAAACTGTCTGGGAGACCCCCTACTCCTTGTCTTCCTCCTACTGCAAACAGAGTTGATAAGCATATTGCTGCTGCGGCTTCAA CTCAACCGAATGGCCATTCATCCGGGTTGAGTGACTTGGGTGAAATCAATGCTGCATTATCTGGTTTAGGCCTCTCAAATTCTAGACATACCGAGCAAGA TAGTGTTAATTTGCAGACGCGTCACCTGGATAGGCAAGCTGGAGATATGCTTCTTAAGATGTCAAATGGCCAAACCCGGAATTTTACTCATTCCGACACG TTCCCACTTTCTTCTGATTATACTAATCTTGCTAGTAAAATAGGAGTCATGTCGAGCTTTGATGGTCCAAATGTAAACTCTAATGGAGAAGTTCGCATTC CTAAAAGAACTTCCTCCTCTTCAAATCTTCACTCAAATGTACATTCATCAGCCCTTGGAGGTTTTGAAGGTGCAGATATCCGTCATCAGAGCATGAATAC TCCAGGCTCATCCTTAGATGGTAGTACAATTGCACAAAATCTGAATCGACTGGGTAGTCAAGTTGGGTCAGATCTTCATTTTCCCATTATGGATGCACAT TACGCACAGTATTTGCGCAGATCGTCAGACTATTCAACCCACACATCAGCTAGTTCAAGTGGTCATCAGTTCCAAAATTATTCAGGCACTTCACATGGAG ACCTTACTGATATTCAGAAAGCATATCTTGAGCTGATGCTTTCCCAACAGAAGCAAGAATACGATCTGCCGCTTTCTCGTAAGGCTGCCACTTTGAATCA AGCATACTATAGGAATCCATCATACGGTCTTGGTATACCATATCATGTAAACTCAATGGGAAACTCTGTCCATCCTTCGATTACATCTAGAAATCTTCAG AATGAACGGGTTGCACACTTTGCTTCCATGATGCGGAACTCGATGGGAGGTTCTGTTGGCTCGTGGAACTCCGATACTGGTGGTGGGACAGCTGAAAGGA GATACAACTCATCTTCTTTACTTGATGAGTTTAAGAACAACAAGACCAGGTCCTTTGAACTGTTAGACATAGCGGGGCAAGTTGTTGAATTCAGTACGGA TCAGTATGGCAGTCGATTCATTCAGCAGAAATTAGAAACTGCTACAATTGAAGAGAAGAACAAGATATTTCCAGAGATTATCCCTCATGCTCGTACCTTG ATGACTGATGTCTTTGGAAATTATGTTATACAAAAATTCTTTGAGCATGGAACTGAAGCCCAAAGAATGGAGTTGGCTAGTGAACTTACTGGTCATGTCT TACCTCTCAGCCTCCAGATGTATGGGTGCAGAGTTATCCAGAAGGCCTTGGAAGTGGTTGATGCCAATCACCAGATTGAAATGGTGACAGAGCTTGATGG TTCGGTGATGAAATGTGTTCGCGATCAGAATGGTAATCATGTTATCCAGAAGTGTATAGAGTGTGTCCCTGAAGACAAAATTCAGTTTATCATCTCTTCA TTTTATGGACAAGTTGTGGTACTCTCAACCCATCCTTATGGCTGTCGGGTGATTCAGCGAGTCCTCGAGCACTGCAAGGATGAGAACACACAGCAAGTTA TTATGGACGAAATCATGCAATCAGTTTGTACCTTAGCACAAGATCAATATGGAAATTATGTTATTCAGCACGTCCTTGAACATGGTAAACCGGACGAAAG ATCAGCGATCATCAGCAAGCTTGCAGGGCAAATCGTCAAAATGAGTCAACAGAAATTCGCTTCGAACGTAGTGGAGAAGTGCTTAACGTTTGGTGGTCCC GATGAACGCCAGATTTTGGTGAACGAGATGCTTGGTTCAACTGACGAAAATGAGCCTTTGCAGGCCATGATGAAAGACCCATTCGGAAACTACGTTGTGC AGAAGGTTTTGGAGACATGCGACGATCAGAGCCTCGAGCTAATCCTCTCTCGAATAAAAGTCCATTTGAACGCTTTGAAGAGGTACACGTACGGAAAGCA CATTGTTTCTCGAGTCGAGAAGCTCATCACAACCGGAGAGAGGCGCATTGGATTGTCATCTTCAGTGTCCACATAG
AA sequence Show only first row Show all	>Lus10037976 pacid=23163679 polypeptide=Lus10037976 locus=Lus10037976.g ID=Lus10037976.BGIv1.0 annot-version=v1.0 MASVSNIDMMPTLDDRLQEGNGSLEQRLQSELDLMLRAQRNQRMVDRDMDQNIYRSGSAPPTVEGSLRAVGSLFQNPSFNGVATNGFGNGNTSTNNNAMM TEDEIRLHPAYLSYYYSNDNINPRLPPPLLSKEDWRVAQRFQAGGSSFGGIGDLRKKKLVDNGDSSSLFSMQPGLSAHDAEKELMELRNGSRRNFSRQTM GVWPDSNADGLIGLQGSGIGARRKSFADILQEGLDQSVSMGGQLSRPASHNALSNPVAVLGLPNGMESIDSLKAGAAPPGFGGASVSHSFASAVGSSLSR STTPEQKLSGRPPTPCLPPTANRVDKHIAAAASTQPNGHSSGLSDLGEINAALSGLGLSNSRHTEQDSVNLQTRHLDRQAGDMLLKMSNGQTRNFTHSDT FPLSSDYTNLASKIGVMSSFDGPNVNSNGEVRIPKRTSSSSNLHSNVHSSALGGFEGADIRHQSMNTPGSSLDGSTIAQNLNRLGSQVGSDLHFPIMDAH YAQYLRRSSDYSTHTSASSSGHQFQNYSGTSHGDLTDIQKAYLELMLSQQKQEYDLPLSRKAATLNQAYYRNPSYGLGIPYHVNSMGNSVHPSITSRNLQ NERVAHFASMMRNSMGGSVGSWNSDTGGGTAERRYNSSSLLDEFKNNKTRSFELLDIAGQVVEFSTDQYGSRFIQQKLETATIEEKNKIFPEIIPHARTL MTDVFGNYVIQKFFEHGTEAQRMELASELTGHVLPLSLQMYGCRVIQKALEVVDANHQIEMVTELDGSVMKCVRDQNGNHVIQKCIECVPEDKIQFIISS FYGQVVVLSTHPYGCRVIQRVLEHCKDENTQQVIMDEIMQSVCTLAQDQYGNYVIQHVLEHGKPDERSAIISKLAGQIVKMSQQKFASNVVEKCLTFGGP DERQILVNEMLGSTDENEPLQAMMKDPFGNYVVQKVLETCDDQSLELILSRIKVHLNALKRYTYGKHIVSRVEKLITTGERRIGLSSSVST

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10360		APUM4	pumilio 4 (.1)		Lus10037976 [exp]	0	1
AT1G13970			Protein of unknown function (D...		Lus10036799 [exp]	5.4	0.8361
AT5G18860		NSH3	nucleoside hydrolase 3, inosin...		Lus10041248 [exp]	10.8	0.8266
AT3G54100			O-fucosyltransferase family pr...		Lus10027753 [exp]	12.0	0.8274
AT5G48940			Leucine-rich repeat transmembr...		Lus10028612 [exp]	13.6	0.8229
AT5G51640		TBL17, YLS7	YELLOW-LEAF-SPECIFIC GENE 7, T...		Lus10015026 [exp]	15.4	0.8248
AT3G24240			Leucine-rich repeat receptor-l...		Lus10018911 [exp]	16.7	0.8130
AT3G01510		LSF1	like SEX4 1 (.1)		Lus10022236 [exp]	17.5	0.8169
AT3G54100			O-fucosyltransferase family pr...		Lus10035540 [exp]	17.9	0.8243
AT2G22620			Rhamnogalacturonate lyase fami...		Lus10019231 [exp]	18.5	0.8143
AT5G41040			HXXXD-type acyl-transferase fa...		Lus10032019 [exp]	19.4	0.7826

Compare expression of checked genes

Lus10037976 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.