Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67623 82 / 3e-18 F-box family protein (.1) AT1G74875 76 / 2e-16 unknown protein AT2G35280 69 / 2e-14 F-box family protein (.1) AT3G30430 47 / 9e-07 F-box family protein (.1) AT1G67340 47 / 4e-06 HCP-like superfamily protein with MYND-type zinc finger (.1) AT5G50450 44 / 5e-05 HCP-like superfamily protein with MYND-type zinc finger (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038709 [exp] 445 / 1e-160 AT1G67623 90 / 3e-21 F-box family protein (.1) Lus10030128 [exp] 261 / 1e-88 AT1G67623 71 / 2e-14 F-box family protein (.1) Lus10038720 [exp] 186 / 6e-60 ND 41 / 8e-05 Lus10022147 [exp] 184 / 2e-59 AT1G67623 78 / 5e-18 F-box family protein (.1) Lus10005844 [exp] 174 / 3e-55 AT1G67623 76 / 3e-17 F-box family protein (.1) Lus10023768 [exp] 129 / 3e-38 AT1G74875 66 / 6e-14 unknown protein Lus10006434 [exp] 117 / 1e-31 AT1G67623 61 / 1e-10 F-box family protein (.1) Lus10030790 [exp] 84 / 1e-18 AT1G67623 57 / 4e-09 F-box family protein (.1) Lus10037021 [exp] 51 / 3e-07 AT1G67340 291 / 8e-97 HCP-like superfamily protein with MYND-type zinc finger (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G008800 [exp] 185 / 3e-58 AT1G74875 110 / 2e-29 unknown protein Potri.001G321400 [exp] 158 / 6e-48 AT1G67623 102 / 6e-26 F-box family protein (.1) Potri.012G097600 [exp] 56 / 7e-09 AT1G67340 436 / 2e-153 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.015G096200 [exp] 55 / 9e-09 AT1G67340 438 / 3e-154 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.001G056800 [exp] 49 / 1e-06 AT1G67340 499 / 2e-177 HCP-like superfamily protein with MYND-type zinc finger (.1) Potri.003G171400 [exp] 44 / 6e-05 AT1G67340 484 / 1e-171 HCP-like superfamily protein with MYND-type zinc finger (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10037978 pacid=23163770 polypeptide=Lus10037978 locus=Lus10037978.g ID=Lus10037978.BGIv1.0 annot-version=v1.0 ATGGCCTCATCAATCTCCTCCCCCCACCATCTCCCCAAAGACATCCTCATCGACGTCCTCGCCAGGGTAGCCCTCAGATCCTCCGCCGACCTCCTCAGCG CCAAATTGACATGCAAGACCTTGTTGGATGCATCCGCCGACGACTACATCTACCGCCACGCTGCCATCTCCGAATTCCCTCTCATCCCTTGGAAGATCAA CCTCCAAGCCTTATCCTTCCTCGATCGATGCATAACCAGCGGCAACCCCGAGGCTCTGTTCCGCCGAGGCATGATCGACTTCTTCAGTTCGCTTCAAATT GAATCGGGGCTTGCCAACTTGATGTTGGCAGCCCGGTCGGGTCACCTGGAATCGGTTTATGTCTGTGGGATCGTTGCGTTGTGCGAGGGCCAGGAGGAGG AAGGGATGGCTTTGCTTCGGTCTATAGACGGCGGCGGATCACGGTGGCCGGATATGGTTAAGTATTGTCGAAACAGGGTGAAATCGGTGAGAGGAGTTAT GTGGGTCAGAAATTTCATGGTGGGAGAGCACAATCCGGCAGGGAGGGGGAATAATTGTGACTCTTGCCGCGGCGGCGGGGTTGGATTATTAGGAGCACTG TCGGAAGAAGCAAAGTGGGCGACGAGGGAGGATGAAGAACTGGAATTCTACGCCGCAAAACGTTGTCGGTCATGCTTTTGGGACCACGAGGCGGCGTCGT TTCGTAATATGTTGAGATTCGGCACCTTCGTTTTGTGA
AA sequence Show only first row Show all	>Lus10037978 pacid=23163770 polypeptide=Lus10037978 locus=Lus10037978.g ID=Lus10037978.BGIv1.0 annot-version=v1.0 MASSISSPHHLPKDILIDVLARVALRSSADLLSAKLTCKTLLDASADDYIYRHAAISEFPLIPWKINLQALSFLDRCITSGNPEALFRRGMIDFFSSLQI ESGLANLMLAARSGHLESVYVCGIVALCEGQEEEGMALLRSIDGGGSRWPDMVKYCRNRVKSVRGVMWVRNFMVGEHNPAGRGNNCDSCRGGGVGLLGAL SEEAKWATREDEELEFYAAKRCRSCFWDHEAASFRNMLRFGTFVL

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67623			F-box family protein (.1)		Lus10037978 [exp]	0	1
AT2G39220		PLP6, PLAIIB ,P...	PATATIN-like protein 6 (.1)		Lus10040394 [exp]	8.7	0.9007
AT4G31130			Protein of unknown function (D...		Lus10014344 [exp]	13.3	0.8936
AT5G45100		BRG1	BOI-related gene 1, SBP (S-rib...		Lus10018294 [exp]	15.1	0.9035
AT5G01950			Leucine-rich repeat protein ki...		Lus10035605 [exp]	17.3	0.9023
AT3G26100			Regulator of chromosome conden...		Lus10006242 [exp]	21.7	0.9025
AT4G31130			Protein of unknown function (D...		Lus10026052 [exp]	38.5	0.8890
AT3G26935			DHHC-type zinc finger family p...		Lus10022451 [exp]	40.4	0.8904
AT1G07180		NDA1, ATNDI1	ARABIDOPSIS THALIANA INTERNAL ...		Lus10036185 [exp]	42.4	0.8678
AT4G33430		SERK3, RKS10, E...	RECEPTOR KINASES LIKE SERK 10,...		Lus10020962 [exp]	42.6	0.8888
AT4G37560			Acetamidase/Formamidase family...		Lus10011528 [exp]	43.4	0.8783

Compare expression of checked genes

Lus10037978 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.