Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G39120 308 / 2e-104 WTF9 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT5G48040 152 / 3e-43 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G24320 125 / 2e-33 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G71850 124 / 2e-32 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT3G58520 120 / 2e-31 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT2G31290 99 / 1e-23 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT5G45790 94 / 6e-22 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) AT3G63090 89 / 3e-20 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT1G06440 79 / 1e-16 Ubiquitin carboxyl-terminal hydrolase family protein (.1) AT4G01037 76 / 1e-15 AtWTF1 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038710 [exp] 505 / 0 AT2G39120 467 / 4e-164 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10011327 [exp] 152 / 2e-43 AT5G48040 425 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10012201 [exp] 145 / 6e-41 AT5G48040 424 / 1e-147 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10035074 [exp] 129 / 6e-34 AT1G71850 479 / 5e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10017896 [exp] 129 / 7e-34 AT1G71850 478 / 7e-164 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000847 [exp] 125 / 1e-33 AT3G58520 501 / 1e-178 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10015979 [exp] 125 / 3e-33 AT3G58520 564 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Lus10027445 [exp] 113 / 7e-31 AT4G24320 206 / 9e-66 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Lus10000098 [exp] 84 / 3e-18 AT3G63090 557 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G036600 [exp] 351 / 5e-121 AT2G39120 509 / 0.0 what's this factor 9, Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.002G230900 [exp] 154 / 4e-44 AT5G48040 484 / 9e-171 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.013G115500 [exp] 136 / 2e-36 AT1G71850 474 / 1e-161 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.004G223200 [exp] 127 / 6e-34 AT4G24320 437 / 4e-152 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.006G195900 [exp] 122 / 4e-32 AT3G58520 578 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.005G191100 [exp] 96 / 1e-22 AT2G31290 575 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G220000 [exp] 91 / 5e-21 AT3G63090 499 / 7e-177 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.016G030300 [exp] 88 / 1e-19 AT5G45790 466 / 8e-163 Ubiquitin carboxyl-terminal hydrolase family protein (.1.2) Potri.002G245100 [exp] 79 / 7e-17 AT1G06440 544 / 0.0 Ubiquitin carboxyl-terminal hydrolase family protein (.1) Potri.014G096800 [exp] 80 / 9e-17 AT4G01037 588 / 0.0 what's this factor?, Ubiquitin carboxyl-terminal hydrolase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF11955 [flax] [poplar] PORR Plant organelle RNA recognition domain
Representative CDS sequence Show only first row Show all	>Lus10037979 pacid=23163824 polypeptide=Lus10037979 locus=Lus10037979.g ID=Lus10037979.BGIv1.0 annot-version=v1.0 ATGAGTCAAGAAAAGGCATTGCCTATGAAGATCATCAAGGGATTGGGATGGTATTTGGGGTTTTCTGATGATATGCTGCAGAAGCTTGATGATGGGCCTT TCAGATTAGTGGATTTAGAAGGTGGGTTGAAAGGATTAGCTGTTGAGAGTGAAGAAAGAGTTCTATCTGTTGTGCAAAAGAATGCTATGAAAAGAGGGGT TTATTCTGGAGAACCAATGGAGGCACTAGAGTTTCCTCTCTTTCCATCAAAAGGTTTGAGGCTGAAGAAGAAGATAGCGGATTGGCTCATTGAGTTTCAA AAGCTTCCTTATGTGTCTCCTTATGAGGATTACTCCTATCTGGACACTGACAGTGATATTGCAGAGAAAAGGGTTGTGGGGTTTCTTCATGAGTTGCTTT GTTTGTTTGTTGAGCATTCCGCTGAAAGAAAGAAGCTTCTGTGTCTGAAGAAGTATTTTGGGTTGCCACAGAAAGTGCACAAGGCTTTTGAGAAGCATCC CCACTTGTTCTACTTGTCTCACAGGAACAAAACCCGTACGGCTATTCTTAAGGAGGCTTATCGCGACGAATCGGCCATAGAGAGGCATCCCTTGGTGAGT GTTAGACAGAAATATGTTGAATTGATGATCGAGTCCGATAGTATTTTGAAAAGGAGAAGAAGTAGAACAAGTTATCAAGTGGAGGCTGTTGTTGATCATG GGAAGTCCGAGTCTGATCTGGATTGCCACTGTGAAAGCAGGCAAGTGGAATTAGAAGAATTTGTAGGAAACGACAGTTGA
AA sequence Show only first row Show all	>Lus10037979 pacid=23163824 polypeptide=Lus10037979 locus=Lus10037979.g ID=Lus10037979.BGIv1.0 annot-version=v1.0 MSQEKALPMKIIKGLGWYLGFSDDMLQKLDDGPFRLVDLEGGLKGLAVESEERVLSVVQKNAMKRGVYSGEPMEALEFPLFPSKGLRLKKKIADWLIEFQ KLPYVSPYEDYSYLDTDSDIAEKRVVGFLHELLCLFVEHSAERKKLLCLKKYFGLPQKVHKAFEKHPHLFYLSHRNKTRTAILKEAYRDESAIERHPLVS VRQKYVELMIESDSILKRRRSRTSYQVEAVVDHGKSESDLDCHCESRQVELEEFVGNDS

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G39120		WTF9	what's this factor 9, Ubiquiti...		Lus10037979 [exp]	0	1
AT1G13810			Restriction endonuclease, type...		Lus10017632 [exp]	1.4	0.7613
AT3G05640			Protein phosphatase 2C family ...		Lus10020671 [exp]	8.2	0.7281
AT2G39170			unknown protein		Lus10018298 [exp]	8.5	0.6843
AT2G36930	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10014426 [exp]	11.9	0.7159
AT3G18110		EMB1270	embryo defective 1270, Pentatr...		Lus10013785 [exp]	15.0	0.6974
AT4G02510		TOC86, TOC160, ...	TRANSLOCON AT THE OUTER ENVELO...		Lus10028707 [exp]	28.2	0.7114
AT3G10860			Cytochrome b-c1 complex, subun...		Lus10019118 [exp]	29.0	0.7145
AT5G02500		AtHsp70-1, AT-H...	HEAT SHOCK PROTEIN 70-1, ARABI...		Lus10009072 [exp]	29.4	0.6203
AT3G59280		TXR1	THAXTOMIN A RESISTANT 1, Prote...		Lus10032532 [exp]	29.6	0.7133
AT3G10480	NAC	ANAC050	NAC domain containing protein ...		Lus10033676 [exp]	29.9	0.7024

Compare expression of checked genes

Lus10037979 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.