Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G09830 506 / 7e-178 Protein kinase superfamily protein (.1.2) AT2G39110 499 / 3e-175 Protein kinase superfamily protein (.1) AT5G03320 478 / 9e-167 Protein kinase superfamily protein (.1) AT2G28940 416 / 3e-142 Protein kinase superfamily protein (.1.2) AT3G28690 320 / 1e-105 Protein kinase superfamily protein (.1.2.3) AT5G47070 319 / 8e-105 Protein kinase superfamily protein (.1) AT5G15080 320 / 6e-104 Protein kinase superfamily protein (.1) AT3G01300 317 / 4e-103 Protein kinase superfamily protein (.1) AT1G14370 305 / 4e-99 Kin1, PBL2, APK2A PBS1-like 2, kinase 1, protein kinase 2A (.1) AT2G02800 301 / 9e-98 Kin2, APK2B protein kinase 2B (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038711 [exp] 823 / 0 AT3G09830 547 / 0.0 Protein kinase superfamily protein (.1.2) Lus10016536 [exp] 411 / 8e-140 AT2G28940 576 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040804 [exp] 407 / 2e-138 AT2G28940 578 / 0.0 Protein kinase superfamily protein (.1.2) Lus10013812 [exp] 336 / 1e-113 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10026524 [exp] 335 / 2e-113 AT3G09830 342 / 2e-117 Protein kinase superfamily protein (.1.2) Lus10040135 [exp] 335 / 3e-111 AT5G47070 456 / 3e-160 Protein kinase superfamily protein (.1) Lus10001088 [exp] 330 / 2e-109 AT5G47070 455 / 4e-160 Protein kinase superfamily protein (.1) Lus10030668 [exp] 315 / 5e-102 AT5G15080 723 / 0.0 Protein kinase superfamily protein (.1) Lus10005255 [exp] 313 / 2e-101 AT5G15080 720 / 0.0 Protein kinase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G225300 [exp] 588 / 0 AT2G39110 538 / 0.0 Protein kinase superfamily protein (.1) Potri.008G036800 [exp] 587 / 0 AT3G09830 537 / 0.0 Protein kinase superfamily protein (.1.2) Potri.006G126000 [exp] 497 / 9e-174 AT3G09830 587 / 0.0 Protein kinase superfamily protein (.1.2) Potri.009G031500 [exp] 424 / 2e-145 AT2G28940 565 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G240500 [exp] 419 / 3e-143 AT2G28940 563 / 0.0 Protein kinase superfamily protein (.1.2) Potri.014G052700 [exp] 368 / 1e-123 AT5G47070 431 / 2e-149 Protein kinase superfamily protein (.1) Potri.001G149100 [exp] 351 / 1e-117 AT5G47070 496 / 7e-176 Protein kinase superfamily protein (.1) Potri.003G085300 [exp] 337 / 1e-111 AT5G47070 472 / 6e-166 Protein kinase superfamily protein (.1) Potri.004G123800 [exp] 322 / 4e-105 AT5G15080 694 / 0.0 Protein kinase superfamily protein (.1) Potri.017G077300 [exp] 320 / 3e-104 AT5G15080 690 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10037980 pacid=23163830 polypeptide=Lus10037980 locus=Lus10037980.g ID=Lus10037980.BGIv1.0 annot-version=v1.0 ATGGGGTTTTTTTGGGTTGGTGAGCCTACAAGCCAGCTGCCTTGGATTGACCTTCTCCCTCCCCTCCCTGCAAGAAAGATCATGGAGTCCTCGTTCTTCG AGTTGCCTTTTCTCCGTTTCAGAGTGGGAAAAGTTAACAACAAATTTCTTGCGGTTATGAAGTGTTTCCATTACTTCTCAAGCAAAGACAGTAATGGTGG TGGAGGAGGAGAAGGAAAATCACCATCCACGCCAGTTCCGAATTCAATTTCAGGGCGATCAAATTCTTCTTCGATCTCCATGTCGACCGATCTTGACTTG AGAAGATCTGGGTCTGAATTCAATTCCCAAAACATGTCCGATTTCAGCACAGAATCTTCTGCAAAGAACTCCTTCGCTGTATTGTCACAGAGACAACAGA GCAGCAGCGGCAGCAGTCATCTTCGGGTTTTCACATTCAGCGAGCTGAAGACGGCCACCAAGAACTTCAGCAGATCGCTCATGATTGGAGAAGGTGGGTT TGGTGGTGTCTACCGAGGCGTGATTAAGAGCACTGAGGAGGTTGGTAAGAAGATTGACATTGCTGTCAAGCAATTGAGCAGAAGGGGCCTCCAGGGGCAT AAGGAATGGGTTACAGAAGTGAATGTGTTAGGAATCGTTGAACACGAAAATCTGGTGAAGCTGATCGGCTACTGTGCCGAGGATGATGAAAGAGGCATCC AGCGGTTGTTGGTATACGAGTACATGCCAAACCGAAGTGTGCTGGATCATTTATCAAGTCGGTTTCAGAAACCTCTTTCCTGGGGAACAAGGATGAAGAT TGCTCAAGATACAGCCAAGGGATTAGCTTACCTCCATGAAGGAATGGATTTCCAGATCATATTCAGAGATTTCAAGTCATCCAACATACTTCTGGATGAG GAATGGAATGCAAAGTTGTCAGATTTTGGGCTGGCGAGGCTGGGGCCTTCTGAAGGATTGAGTCACGTTTCAACTGCGGTGGTGGGTACAATTGGATATG CAGCACCTGAGTACATTCAAACGGGACGCCTAACATCCAAAAGTGATGTGTGGAGCTATGGTGTTTTCCTATATGAACTCATAACAGGGAGACGTCCCTT AGACCGGGACAAGCCCAAGAATGAGCAGAAGCTGTTGGAATGGGTGAGGCAACACCTGTCTGATATGAGGAAATTTAGGTTAATTCTGGATCCCAAACTG GAAGGGAAGTACGATCTTAAATCTGCCCAGAGGCTGGCCGCCGTAGCCAACAGGTGCTTGTTGAGACAGGCTAAAGCGCGTCCCAAGATGAGCGAAGTAG TCGAGATGCTGAACAAAATTATGGATTCAGCACAACTTGGAACCAGCCCCCAACTTCCCATGAAGACGTTGAGAGATCCTGAATCTTCCATACGGAATAG TATCAACCGAAGGTTTGCCAAGACAAAAATCAGAGACAAAGGGTTTTCCTGTAGGAGCATCTGGAAGCCAAAGTGTTTTAGAGCATCATGA
AA sequence Show only first row Show all	>Lus10037980 pacid=23163830 polypeptide=Lus10037980 locus=Lus10037980.g ID=Lus10037980.BGIv1.0 annot-version=v1.0 MGFFWVGEPTSQLPWIDLLPPLPARKIMESSFFELPFLRFRVGKVNNKFLAVMKCFHYFSSKDSNGGGGGEGKSPSTPVPNSISGRSNSSSISMSTDLDL RRSGSEFNSQNMSDFSTESSAKNSFAVLSQRQQSSSGSSHLRVFTFSELKTATKNFSRSLMIGEGGFGGVYRGVIKSTEEVGKKIDIAVKQLSRRGLQGH KEWVTEVNVLGIVEHENLVKLIGYCAEDDERGIQRLLVYEYMPNRSVLDHLSSRFQKPLSWGTRMKIAQDTAKGLAYLHEGMDFQIIFRDFKSSNILLDE EWNAKLSDFGLARLGPSEGLSHVSTAVVGTIGYAAPEYIQTGRLTSKSDVWSYGVFLYELITGRRPLDRDKPKNEQKLLEWVRQHLSDMRKFRLILDPKL EGKYDLKSAQRLAAVANRCLLRQAKARPKMSEVVEMLNKIMDSAQLGTSPQLPMKTLRDPESSIRNSINRRFAKTKIRDKGFSCRSIWKPKCFRAS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G09830			Protein kinase superfamily pro...		Lus10037980 [exp]	0	1
AT3G11760			unknown protein		Lus10013598 [exp]	4.2	0.8265
AT1G68840	AP2_ERF	EDF2, RAV2, RAP...	TEMPRANILLO 2, RELATED TO AP2 ...		Lus10034276 [exp]	9.8	0.7404
AT2G18730		ATDGK3	diacylglycerol kinase 3 (.1)		Lus10006991 [exp]	14.8	0.7023
AT2G23810		TET8	tetraspanin8 (.1)		Lus10019965 [exp]	15.4	0.8124
AT4G32030			unknown protein		Lus10001935 [exp]	15.6	0.8113
AT3G11760			unknown protein		Lus10021254 [exp]	16.6	0.8120
AT5G54165			unknown protein		Lus10023231 [exp]	18.5	0.8067
AT1G80840	WRKY	ATWRKY40, WRKY4...	WRKY DNA-binding protein 40 (....		Lus10024074 [exp]	18.6	0.8098
AT1G29690		CAD1	constitutively activated cell ...		Lus10002768 [exp]	18.8	0.7881
AT1G53050			Protein kinase superfamily pro...		Lus10031651 [exp]	20.4	0.7660

Compare expression of checked genes

Lus10037980 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.