Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G60740 1270 / 0 ABCG28 ATP-binding cassette G28, ABC transporter family protein (.1) AT2G37010 1269 / 0 ATNAP12 non-intrinsic ABC protein 12 (.1) AT1G53390 905 / 0 ABCG24 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT3G25620 204 / 1e-56 ABCG21 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) AT1G31770 200 / 7e-54 ABCG14 ATP-binding cassette G14, ATP-binding cassette 14 (.1) AT1G17840 194 / 2e-51 AtABCG11, WBC11, DSO, ABCG11 ,COF1, ATWBC11 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1) AT3G21090 193 / 3e-51 ABCG15 ATP-binding cassette G15, ABC-2 type transporter family protein (.1) AT4G27420 189 / 3e-50 ABCG9 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) AT1G51500 189 / 5e-50 AtABCG12, WBC12, ABCG12, D3, CER5, ATWBC12 ECERIFERUM 5, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX 12, ATP-binding cassette G12, ABC-2 type transporter family protein (.1) AT5G06530 185 / 1e-48 AtABCG22, ABCG22 Arabidopsis thaliana ATP-binding cassette G22, ATP-binding cassette G22, ABC-2 type transporter family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038714 [exp] 2221 / 0 AT1G53390 1310 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Lus10016115 [exp] 1263 / 0 AT5G60740 1639 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10021448 [exp] 1194 / 0 AT5G60740 1559 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10023020 [exp] 1095 / 0 AT2G37010 1484 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10041325 [exp] 899 / 0 AT5G60740 1548 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Lus10023199 [exp] 768 / 0 AT2G37010 1141 / 0.0 non-intrinsic ABC protein 12 (.1) Lus10034775 [exp] 220 / 2e-60 AT1G31770 1028 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033315 [exp] 207 / 2e-58 AT1G31770 551 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Lus10033314 [exp] 209 / 1e-57 AT1G31770 941 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G225200 [exp] 1526 / 0 AT1G53390 1393 / 0.0 ATP-binding cassette G24, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) Potri.001G058900 [exp] 1337 / 0 AT5G60740 1672 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.006G126100 [exp] 1298 / 0 AT2G37010 1377 / 0.0 non-intrinsic ABC protein 12 (.1) Potri.003G169000 [exp] 929 / 0 AT5G60740 1643 / 0.0 ATP-binding cassette G28, ABC transporter family protein (.1) Potri.004G236500 [exp] 218 / 7e-60 AT1G31770 970 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.003G046800 [exp] 211 / 2e-57 AT1G31770 945 / 0.0 ATP-binding cassette G14, ATP-binding cassette 14 (.1) Potri.010G131900 [exp] 203 / 1e-54 AT3G25620 852 / 0.0 ATP-binding cassette G21, ABC-2 type transporter family protein (.1.2) Potri.013G111900 [exp] 191 / 7e-51 AT1G71960 795 / 0.0 Arabidopsis thaliana ATP-binding cassette G25, ATP-binding casette G25, ATP-binding casette family G25 (.1) Potri.011G123200 [exp] 190 / 1e-50 AT4G27420 737 / 0.0 ATP-binding cassette G9, ABC-2 type transporter family protein (.1) Potri.017G155300 [exp] 189 / 1e-49 AT1G17840 1174 / 0.0 DESPERADO, CUTICULAR DEFECT AND ORGAN FUSION 1, ARABIDOPSIS THALIANA WHITE-BROWN COMPLEX HOMOLOG PROTEIN 11, ATP-binding cassette G11, white-brown complex homolog protein 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [flax] [poplar] P-loop_NTPase PF00005 [flax] [poplar] ABC_tran ABC transporter
Representative CDS sequence Show only first row Show all	>Lus10037981 pacid=23163632 polypeptide=Lus10037981 locus=Lus10037981.g ID=Lus10037981.BGIv1.0 annot-version=v1.0 ATGGATTTCGGAGGGTTGATTCTGATATTGGGAGTTGGTTTTCTGAGCTTTCTGGGAGAGTGTCAAGATATGCAGGGCGACTACAGTGCATATGCTGACG ACGCATCTCTTCGTCCACTCATGGCAGAGTATGCTTATAGCAAGATGTCTAATCTCACTGCTAATATCACCAGAGTTCTTGGGAAGCAGGCCAGCTTCTG CATGAAGGACCCGGATGCTGATTGGAATCGAGCCTTCAATTTCTCCTCCAATCTGGATTTCTTGTCTAATTGCATACTGCAGACCAGAGGAGATATGATG CGACGCATCTGTAGTGAATCAGAAATGAAATTCTACTTCAATACGCTGATGGAGTCGGATGAGACGCGAAAGAAGCAGGGTTCTAACTATCTTAGGCCAA ACCTCAACTGCAATCTAACCAGTTGGGTTTCTGGATGTGAACCTGGGTGGGCTTGCAGTGTTGGTGGGACTCAACCTGTCGACCTTCAAAACTCACACGT CATTCCTCCAAGAACTAGCAACTGCGAGAAATGTTGCGAAGGTTTCTTTTGCCCACATGGCCTTACTTGTATGATACCTTGTCCATTGGGTTCTTATTGC CCGCATGCAACTCTCAATAAGGCAACTGCTGTATGCGAACCATATAATTATCAATTACCTCCAGGGCAACCAAACCATACCTGTGGAGGAGCAAACACAT GGGCTGACATTACCACTAGCGGTGAGATATTCTGTGCAGCCGGCTCATACTGTCCAACTACCATTCAGCAGAATGCTTGTAGCAACGGACACTTTTGCAG AATGGGTGCCACATCTGAGACACGTTGCTTTAAGTTGGCATCCTGTGATTCGAAAACAACAACTCAAAATATTCATGCATATGGTGTCATGGTTATAGTT GCTTTAAGTACGGTGTTGCTCATGATTTACAACTGCTCCGATCAAGTTCTCGCGATTCGAGAAAGGAGACTGGCAAAATCTAGGGAAGCAGCAGCAGTAA GTGCAAGGGAAACAGCAAAAGCACGCCAAAGATGGAAATCTGCAAAAGGTGCAGCTAGGAAGCGTGCTGGTGGACTGCAGGCTCAGCTCTCTCAAACATT TTCCAGGAAGAAATATACTGTACCTACTGAACAACTTACGGTTATGAATCAAGCCAAGACTGATGATAATGATGGATATTCTACCGATCAATCAGGTGCT CCACCATTTACCCCAGAAATCAGAAAGGAACTTTCTCAAGCTCAGCCTCCTCAAACATCTTCGAGAAATAAATTTTCTCAGGACCAACTCAAGTCTGATG GAGATTCTAATTCATATACAGCATCTGTTTCATCTATGCCAGAAAGTGGAGGGAAAAAGGAACATTCCCACCGTATACATTCGGTACTGGAACTTGATGT CGACTTTGATAGTCATGAAAGTTCAATTATTGACATGGAAGATCCAGATCCTAAAGAACATAAAAAGAAGAAGGGAAAGGACTTGAGTACAGATAGTCAA ATTTTTAAGTATGCGTATTCACAACTTGAGAGGGAAAAGGCAATGCAGCAACAAACCAAGAACCTCACTTTTTCAGGTGTAGTTAAAATGGCTGCTGGTG GTCATCAAGTGAAGAAAAGACCTCTGATTGAGATTTCATTTAAAGACCTTACCTTAACTTTGAAAAACCAAAAGAAGCACCTTTTAAGGTGCGTGACTGG GAAAATCAAGCCTGGCCGAATTACAGCTGTCATGGGTCCATCAGGAGCTGGGAAGACAACCTTTCTTTCTGCTCTAGCTGGGAAGGCCTTAGGGTGTAGG ATTTCTGGTACGATTCTCATAAATGGGAAACCTCAATCCATCCACTCGTATAAGAGAATTATTGGTTTCGTTCCTCAAGATGATATTGTGCATGGGAACT TGACAGTTGAAGAGAATCTTTGGTTCAGTGCCCACTGCAGGCTATCAGCTGACTTGCCGAAGGCAGAAAAGGTTCTAATAGTTGAAAGAGCTATCGAGTC TTTGGGGCTTCAAGGAGTGAGAAATTCCGTTGTTGGGACAGTCGAAAAACGAGGAATTTCTGGAGGACAGAGGAAGCGTGTAAATGTTGGACTAGAAATG GTTATGGAGCCTTCCCTTTTACTCTTAGATGAACCTACGTCAGGTCTGGACAGTGCATCGTCTCAGCTACTTATCAGAGCACTTCGTCGCGAAGCTCTTG AAGGTGTCAATATACTGATGGTTGTTCACCAACCTAGCTATTCCCTGTTCAAAATGTTCGATGACTTGGTACTTCTGGCAAGAGGAGGACTAACTGTGTA CCATGGACCGGTTGTGAAAGTCGAAGGGTACTTTGATGGCCTTGGGATCAATGTCCCCGGCCGTATTAATCCTCCTGACCATTATATTGACATTTTGGAG GGTATTGTAAAACCGAGTGCAAGCTCAGGGGCTAACTATACGGACCTTCCTCTAAAATGGATGATGAACAACGGGTACCCTATTCCACCTGACATGAAGG AGAGCACTCCTGGACTACTTATGCCTCCATTGAACAGAATTCCAAGTGTCGTGCAACTTGGTGATGGAGATGAGGACCAGTCGTTTGCTGGGGAACTATG GGAAGATGTGAAGAGCAATGTTGAGGTTCGACGTGACAGAATTCTCCGTAACTTCTTAAAGCCCAGGGATCTGTCAAACCGTAGAACTCCAGGTGTATGG ACACAGTTCAGATACTACCTTGGAAGGGTGTTTAAGCAACGACTAAGAGAGGCCAAAATGCAAGCAGTAGACTTGCTCATTCTTTTCCTGGCTGGAGCTT GCCTAGGGTCCCTTGGAAAAGCAAATGACAAAAACATGGGATCAGCTGGTTATTCACATACTATCATTGCAGTTTCTCTGCTTTGTAAAATAGCAGCTTT GAGATCATTTTCTCTGGACAGACTACAATACTGGAGGGAGAGTGCCTCTGGCATGAGCAGCCTTGCTTACTTTCTAGCCAAGGATACAGTTGATCATTTT AATACAGCGGTCAAGCCTGTTGTGTATCTCTCCATGTTCTATTTCTTCACCAACCCAAGATCAAGCTTTGCAGATAACTACATTGTATTGATTTGCCTTG TCTATTGTGTCACCGGGATTGCCTATGCTTTGGCCATCTTTTTTGCAGCAGGTCCTGCCCAGCTGTGGTCGGTTCTTCTTCCTGTAGTTTTGACTCTCAT TGCAACCCAGCAAAAGCCCAACAAGATCTTGAAGTTCATATCTAACTTCTGCTACCCTAGATGGGCCCTTGAAGCTTTTGTCATTGCAAATGCAGAGAGG TACGATGGAGTATGGCTGCTTACTCGTTGCGGCGCACTAATGAACAGCGGCTACAATGTACATGACTGGATTCTTTGCATATGCGTCCTCCTCCTCTTTG GTTTAGTTGCTCGGATTGTGGCATTCTTTGGCTTGTTGACAGTTGGCCGAAGACGCTGA
AA sequence Show only first row Show all	>Lus10037981 pacid=23163632 polypeptide=Lus10037981 locus=Lus10037981.g ID=Lus10037981.BGIv1.0 annot-version=v1.0 MDFGGLILILGVGFLSFLGECQDMQGDYSAYADDASLRPLMAEYAYSKMSNLTANITRVLGKQASFCMKDPDADWNRAFNFSSNLDFLSNCILQTRGDMM RRICSESEMKFYFNTLMESDETRKKQGSNYLRPNLNCNLTSWVSGCEPGWACSVGGTQPVDLQNSHVIPPRTSNCEKCCEGFFCPHGLTCMIPCPLGSYC PHATLNKATAVCEPYNYQLPPGQPNHTCGGANTWADITTSGEIFCAAGSYCPTTIQQNACSNGHFCRMGATSETRCFKLASCDSKTTTQNIHAYGVMVIV ALSTVLLMIYNCSDQVLAIRERRLAKSREAAAVSARETAKARQRWKSAKGAARKRAGGLQAQLSQTFSRKKYTVPTEQLTVMNQAKTDDNDGYSTDQSGA PPFTPEIRKELSQAQPPQTSSRNKFSQDQLKSDGDSNSYTASVSSMPESGGKKEHSHRIHSVLELDVDFDSHESSIIDMEDPDPKEHKKKKGKDLSTDSQ IFKYAYSQLEREKAMQQQTKNLTFSGVVKMAAGGHQVKKRPLIEISFKDLTLTLKNQKKHLLRCVTGKIKPGRITAVMGPSGAGKTTFLSALAGKALGCR ISGTILINGKPQSIHSYKRIIGFVPQDDIVHGNLTVEENLWFSAHCRLSADLPKAEKVLIVERAIESLGLQGVRNSVVGTVEKRGISGGQRKRVNVGLEM VMEPSLLLLDEPTSGLDSASSQLLIRALRREALEGVNILMVVHQPSYSLFKMFDDLVLLARGGLTVYHGPVVKVEGYFDGLGINVPGRINPPDHYIDILE GIVKPSASSGANYTDLPLKWMMNNGYPIPPDMKESTPGLLMPPLNRIPSVVQLGDGDEDQSFAGELWEDVKSNVEVRRDRILRNFLKPRDLSNRRTPGVW TQFRYYLGRVFKQRLREAKMQAVDLLILFLAGACLGSLGKANDKNMGSAGYSHTIIAVSLLCKIAALRSFSLDRLQYWRESASGMSSLAYFLAKDTVDHF NTAVKPVVYLSMFYFFTNPRSSFADNYIVLICLVYCVTGIAYALAIFFAAGPAQLWSVLLPVVLTLIATQQKPNKILKFISNFCYPRWALEAFVIANAER YDGVWLLTRCGALMNSGYNVHDWILCICVLLLFGLVARIVAFFGLLTVGRRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10037981 [exp]	0	1
AT1G53390		ABCG24	ATP-binding cassette G24, P-lo...		Lus10038714 [exp]	2.4	0.8638
AT2G36670			Eukaryotic aspartyl protease f...		Lus10027732 [exp]	3.7	0.8881
AT5G50950		FUM2	FUMARASE 2 (.1.2.3)		Lus10032296 [exp]	7.3	0.8763
AT1G04950		EMB2781, ATTAF6...	TBP-associated factor 6, EMBRY...		Lus10016578 [exp]	10.0	0.8655
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	12.0	0.8663
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10015179 [exp]	16.7	0.8629
AT5G49760			Leucine-rich repeat protein ki...		Lus10007587 [exp]	25.7	0.8697
AT5G01470			S-adenosyl-L-methionine-depend...		Lus10004816 [exp]	27.3	0.8433
AT1G75560			zinc knuckle (CCHC-type) famil...		Lus10031093 [exp]	27.8	0.8617
AT5G39710		EMB2745	EMBRYO DEFECTIVE 2745, Tetratr...		Lus10012068 [exp]	38.0	0.8409

Compare expression of checked genes

Lus10037981 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.