Plant FIBer expression Database

Lus10037982 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G10350 609 / 0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
AT5G60730 410 / 4e-142 Anion-transporting ATPase (.1)
AT1G01910 134 / 2e-35 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038715
[exp]
759 / 0 AT3G10350 622 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10021449
[exp]
417 / 2e-145 AT3G10350 434 / 2e-152 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Lus10041377
[exp]
121 / 1e-30 AT1G01910 577 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Lus10036552
[exp]
121 / 1e-30 AT1G01910 576 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.010G225100
[exp]
620 / 0 AT3G10350 599 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.008G037100
[exp]
620 / 0 AT3G10350 592 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2)
Potri.014G078100
[exp]
130 / 3e-34 AT1G01910 580 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
Potri.002G152500
[exp]
129 / 1e-33 AT1G01910 590 / 0.0 P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1.2.3.4.5)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF02374 ArsA_ATPase Anion-transporting ATPase
Representative CDS sequence
>Lus10037982 pacid=23163817 polypeptide=Lus10037982 locus=Lus10037982.g ID=Lus10037982.BGIv1.0 annot-version=v1.0
ATGGCATCAACCACTATAATGTCCTGTTCCACTATTTCTTCTTCTACGTCTTCTTCTACTTCTCTCGGGAAGGTTTTCTCCGCAACCAACTCCAGGATCG
GTGCGGTGGGTTTCCCCTCTTTTGCGCCCAAGTTTCAGGCGCCTACGCTTCTTTCGACGAGCTCCATTTCTTGGAATTCAACCAAGCGGAAAAATTCCAG
GAATATACTCCAAGTGAGATCGGTGGCTGCTCCAATTGAAGATGTGGCTGGGTTTGATGATATGGTTTCTGGAACTCGACGGAAGTACTACATGCTTGGT
GGAAAGGGTGGTGTAGGAAAAACTAGCTGTGCTGCTGCGCTTGCTGTGAAGTTTGCAAATAGTGGGCATCCTACTTTAGTTGTATCGACGGATCCAGCAC
ATTCTTTGAGCGATTCTTTCGCACAGGATTTAACAGGAGGCACACTAGTACAGGTCGAGGGACCAGATTCCCCACTTTTTGCTCTCGAGCTGAACCCAGA
GAAAGCCAGAGAAGAATTCCGTACTGCATCTCAGAGTAATGGTGGGACAGGTGTCAAAGATTTCATGGAAGGCATGGGACTTGGAATGCTAGTTGAACAG
TTAGGAGAATTGAAATTGGGAGAGCTACTCGACACACCTCCTCCTGGTTTGGATGAAGCTATTGCGATTTCAAAAGTGATGCAATTTCTAGAGTCGCCAG
AATACAACATGTTTACTCGAATTGTTTTTGATACAGCACCAACAGGTCATACATTGCGACTTCTGTCTTTGCCTGACTTCCTAGATGCATCTATTGGGAA
GATCTTGAAGCTTAAACAAAAAATATCATCAGCTACATCTGCTATCAAATCTGTTTTTGGACAAGAACAACCTCGACAGGATGCTTCCGATAAGTTGGAG
AAGCTGAGGGAAAGGATGGTAAAAGTGCGCGAACTGTTTCGTGACGAGGACTCCACTGAATTTGTCATAGTGACAATCCCTACGGTAATGGCAGTCAGTG
AATCTTCTCGATTGCGCGCTTCCTTGGAGAAGGAGAATGTACCTGTCAGAAGGCTTATTGTAAATCAAATCCTTCCCCCAGCTGTCTCCGACTGCAAATT
TTGTGCGATGAAAAGGAAGGATCAGATGCGTGCCCTTGATATGATAGGGAATGATTCTGAACTGCAGAGCTTGAGATTGATCAAAGCACCTTTAGTCGAT
GTAGAGATCAGAGGTGTTCCAGCTCTTAAGTTCATCGGTGACATCATATGGAAATGA
AA sequence
>Lus10037982 pacid=23163817 polypeptide=Lus10037982 locus=Lus10037982.g ID=Lus10037982.BGIv1.0 annot-version=v1.0
MASTTIMSCSTISSSTSSSTSLGKVFSATNSRIGAVGFPSFAPKFQAPTLLSTSSISWNSTKRKNSRNILQVRSVAAPIEDVAGFDDMVSGTRRKYYMLG
GKGGVGKTSCAAALAVKFANSGHPTLVVSTDPAHSLSDSFAQDLTGGTLVQVEGPDSPLFALELNPEKAREEFRTASQSNGGTGVKDFMEGMGLGMLVEQ
LGELKLGELLDTPPPGLDEAIAISKVMQFLESPEYNMFTRIVFDTAPTGHTLRLLSLPDFLDASIGKILKLKQKISSATSAIKSVFGQEQPRQDASDKLE
KLRERMVKVRELFRDEDSTEFVIVTIPTVMAVSESSRLRASLEKENVPVRRLIVNQILPPAVSDCKFCAMKRKDQMRALDMIGNDSELQSLRLIKAPLVD
VEIRGVPALKFIGDIIWK

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G10350 P-loop containing nucleoside t... Lus10037982
[exp]
0 1
AT5G01510 RUS5 ROOT UV-B SENSITIVE 5, Protein... Lus10027788
[exp]
2.4 0.8699
AT5G58870 FTSH9 FTSH protease 9 (.1) Lus10040695
[exp]
3.5 0.8601
AT1G67280 Glyoxalase/Bleomycin resistanc... Lus10011115
[exp]
9.8 0.8266
AT4G04880 adenosine/AMP deaminase family... Lus10020056
[exp]
9.9 0.8195
AT5G46560 unknown protein Lus10011046
[exp]
15.0 0.8189
AT1G67280 Glyoxalase/Bleomycin resistanc... Lus10043235
[exp]
15.7 0.8195
AT1G75220 AtERDL6 ERD6-like 6, Major facilitator... Lus10001656
[exp]
15.9 0.8016
AT3G15690 Single hybrid motif superfamil... Lus10023118
[exp]
16.9 0.8286
AT3G05350 Metallopeptidase M24 family pr... Lus10029923
[exp]
17.5 0.8123
AT1G75220 AtERDL6 ERD6-like 6, Major facilitator... Lus10002534
[exp]
18.0 0.8096

Lus10037982 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.