Plant FIBer expression Database

Lus10037983 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G54826 125 / 6e-36 Zim17-type zinc finger protein (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.008G037300
[exp]
124 / 4e-36 AT3G54826 173 / 2e-54 Zim17-type zinc finger protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
PF05180 zf-DNL DNL zinc finger
Representative CDS sequence
>Lus10037983 pacid=23163919 polypeptide=Lus10037983 locus=Lus10037983.g ID=Lus10037983.BGIv1.0 annot-version=v1.0
ATGCTGAAAATTGATGTGGGTTTTTACTGCTGTGAGTTCATTGCTGATTTTGTGTTTCCTTGGATTCATTGTCCATCTCAAAGTTCTAGCCTCAAGCTTA
GATATTGTGTATATTTTGCTGTTTTCATTCTAGCAGAAGGTGGTGGTCAGTTTCTCCCGTCTGCCAGTTCAATATTCTCCAGGACTGACTTCTACCAAAG
ATGGTTTCAGACGCAAACCACCGTAGATAGTCGTCAAGTAGATGACCATCCTTTGACAGATGATGCGACTTCTTTGAATCCAGAAGTCTCAACTAAATCC
CAATTGAAGGTATCAGCTTGGAAGATCCCCAGCCGAGATTGGCAAGAGACGGGGGTGGTGGTGGCACGCTGTGGCGGCTGCAACAACCTCCACCTCATTG
CAGATAGGTTAGGGTGGTTTGGGGAGGCTTCAAGCGTGGAGGATTTCTTGGCTTCTCGTGGGGAGGAAGTGATGAAGGGCTCTGCTGACACACTCAATCT
TACACTTGAAGATTTAGCTGGCAAGAATAAGATCTCCACCGAGTGA
AA sequence
>Lus10037983 pacid=23163919 polypeptide=Lus10037983 locus=Lus10037983.g ID=Lus10037983.BGIv1.0 annot-version=v1.0
MLKIDVGFYCCEFIADFVFPWIHCPSQSSSLKLRYCVYFAVFILAEGGGQFLPSASSIFSRTDFYQRWFQTQTTVDSRQVDDHPLTDDATSLNPEVSTKS
QLKVSAWKIPSRDWQETGVVVARCGGCNNLHLIADRLGWFGEASSVEDFLASRGEEVMKGSADTLNLTLEDLAGKNKISTE

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G54826 Zim17-type zinc finger protein... Lus10037983
[exp]
0 1
AT5G23040 CDF1 CELL GROWTH DEFECT FACTOR 1, P... Lus10038965
[exp]
14.7 0.6801
AT1G62810 Copper amine oxidase family pr... Lus10032206
[exp]
21.8 0.6580
AT5G46160 Ribosomal protein L14p/L23e fa... Lus10023296
[exp]
34.8 0.6772
AT1G01720 NAC ATAF1, ANAC002 Arabidopsis NAC domain contain... Lus10042731
[exp]
42.7 0.6691
AT5G64816 unknown protein Lus10025266
[exp]
45.8 0.6621
AT3G11591 unknown protein Lus10024722
[exp]
54.9 0.6296
AT2G36930 C2H2ZnF zinc finger (C2H2 type) family... Lus10014426
[exp]
69.2 0.6382
AT4G26210 Mitochondrial ATP synthase sub... Lus10040553
[exp]
117.2 0.6045
AT3G02950 AtTHO7 Tho complex subunit 7/Mft1p (.... Lus10012882
[exp]
138.6 0.5891
AT5G23960 ATTPS21 terpene synthase 21 (.1.2) Lus10042204
[exp]
146.3 0.5859

Lus10037983 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.