Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 318 / 4e-107 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040419 [exp] 359 / 3e-123 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10023534 [exp] 345 / 2e-117 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10009215 [exp] 342 / 2e-116 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10023535 [exp] 341 / 4e-116 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10040420 [exp] 339 / 2e-115 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10009216 [exp] 335 / 6e-114 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10037985 [exp] 334 / 3e-113 AT5G24090 357 / 2e-124 chitinase A (.1) Lus10001868 [exp] 306 / 2e-102 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10010137 [exp] 305 / 5e-102 AT5G24090 330 / 1e-113 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G242000 [exp] 358 / 6e-123 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.002G165700 [exp] 351 / 5e-120 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.014G091700 [exp] 348 / 4e-119 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.015G024200 [exp] 317 / 1e-106 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.014G091600 [exp] 314 / 1e-105 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.012G033866 [exp] 307 / 5e-103 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.015G024100 [exp] 306 / 1e-102 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024000 [exp] 306 / 1e-102 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024150 [exp] 301 / 2e-100 AT5G24090 329 / 3e-113 chitinase A (.1) Potri.015G023900 [exp] 301 / 2e-100 AT5G24090 329 / 3e-113 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10037984 pacid=23163667 polypeptide=Lus10037984 locus=Lus10037984.g ID=Lus10037984.BGIv1.0 annot-version=v1.0 ATGGCATCATCATCAACAGCATCGATCCTCGTCACCTTAACAACCACTTCACTAGTAGTAGCACTGCTCTTGCTACAGCAGCCTCAGATGGCCACAGCGG GGTCGATAGCAATCTACTGGGGACAGCACAACGGGGAAGGAAGCCTGTCGGAGACATGTGGGACGGGCAAATACAGATACGTGATCATATCATTCCTGTG TGTTTTCGGAAACAGCCAGCCTTATCTCCTCAACCTCGCCAACCACTGCGATCCTCACCTTGACACGTGCACCTCCATGAGCTCCCACATTAACGATTGC CAGACCAAGGGCATTAAGGTCTTTCTCTCCCTCGGCGGAGCCGCTGGAAGCTACTACCTCACCTCCGACGACGACGCCAAGAACCTCGCCCATTATCTTT GGCATAACTACCTCGGCGGACACTCTGACACCAGGCCGTTCGGGTCCGCCGTCCTCGACGGTATTGACTTGGACATCGAAGGTGGGACGACCCAACATTG GGATACCCTGGCCCGAAGCCTGAAGTCGTATCAGGGGGTTCTATTGACGGCAGCTCCACAGTGCCCGTATCCGGACGTCTACGTTGGGGCTGCTATAGCT ACGGGCCTGTTTGACTATCTGTGGGTGCAGTTTTACAACAATGCCCCTTGCCAGTATTCCTCTGGGAATCTAGTGACATCGTGGCATCAGTGGGTGTCCA GTGCTTCTGCTACCAAGATATTTCTGGGTTTGCCTGCTTCCACTGATGCTGCCGGGACAGGCTTCATCCCTGCGTCGGATCTCATCAACGACGTTCTCCC CAAAATAAAGGGGAGTCATAAGTATGGTGGGGTGATGCTCTGGTCCAAGTACTATGACCACCTCAGTGGGTTTTTGAAACGTCACAACGAAAATGTTACA CTGACCGCAGCCCCTCAGTGTCCATTCCCTGATGCTTGGATAGGAGAAGCACTTAAGACTGGACTGTTTGACTATGTTTGGATTCAGTTCTACAACAATC CTCCTTGCCAGTACTCTTCTGGGGGTATCACCAACCTTGAAGATACATGGAAGCAATGGACTTCTGCGATTCCTGCAAAGAAGATCTTTCTCGGATTGCC TGCTGCACCGGATGCTGCTGGGAGTGGTTTCGTCCCAGCGAATGACCTCGAATCTCAGATCCTACCCGTGATCAAGGACAGTTCTAAGTATGGTGGGGTG ATGCTTTGGTCAAAGTACTATGATGATCAAACTGGTTACAGCAAATCCATTAAGAACTCTGTCTAG
AA sequence Show only first row Show all	>Lus10037984 pacid=23163667 polypeptide=Lus10037984 locus=Lus10037984.g ID=Lus10037984.BGIv1.0 annot-version=v1.0 MASSSTASILVTLTTTSLVVALLLLQQPQMATAGSIAIYWGQHNGEGSLSETCGTGKYRYVIISFLCVFGNSQPYLLNLANHCDPHLDTCTSMSSHINDC QTKGIKVFLSLGGAAGSYYLTSDDDAKNLAHYLWHNYLGGHSDTRPFGSAVLDGIDLDIEGGTTQHWDTLARSLKSYQGVLLTAAPQCPYPDVYVGAAIA TGLFDYLWVQFYNNAPCQYSSGNLVTSWHQWVSSASATKIFLGLPASTDAAGTGFIPASDLINDVLPKIKGSHKYGGVMLWSKYYDHLSGFLKRHNENVT LTAAPQCPFPDAWIGEALKTGLFDYVWIQFYNNPPCQYSSGGITNLEDTWKQWTSAIPAKKIFLGLPAAPDAAGSGFVPANDLESQILPVIKDSSKYGGV MLWSKYYDDQTGYSKSIKNSV

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037984 [exp]	0	1
AT3G15280			unknown protein		Lus10005404 [exp]	6.2	0.7369
AT1G24020		MLP423	MLP-like protein 423 (.1.2)		Lus10029182 [exp]	10.2	0.7253
AT5G26650	MADS	AGL36	AGAMOUS-like 36 (.1)		Lus10016180 [exp]	11.5	0.7211
					Lus10019810 [exp]	12.4	0.7259
AT1G07175			unknown protein		Lus10018252 [exp]	16.2	0.6692
AT3G19920			unknown protein		Lus10010180 [exp]	20.9	0.6662
AT2G29040			Exostosin family protein (.1)		Lus10003440 [exp]	28.1	0.6718
AT5G27700			Ribosomal protein S21e (.1)		Lus10010971 [exp]	28.7	0.6837
AT1G11260		ATSTP1, STP1	sugar transporter 1 (.1)		Lus10012596 [exp]	32.5	0.6472
AT4G23160		CRK8	cysteine-rich RLK (RECEPTOR-li...		Lus10031579 [exp]	32.7	0.6652

Compare expression of checked genes

Lus10037984 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.