Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G24090 357 / 2e-124 ATCHIA chitinase A (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009216 [exp] 589 / 0 AT5G24090 360 / 1e-125 chitinase A (.1) Lus10023535 [exp] 484 / 1e-174 AT5G24090 363 / 7e-127 chitinase A (.1) Lus10009215 [exp] 482 / 7e-174 AT5G24090 371 / 6e-130 chitinase A (.1) Lus10040420 [exp] 481 / 3e-173 AT5G24090 361 / 5e-126 chitinase A (.1) Lus10040419 [exp] 406 / 8e-144 AT5G24090 362 / 3e-126 chitinase A (.1) Lus10023534 [exp] 397 / 7e-140 AT5G24090 355 / 1e-123 chitinase A (.1) Lus10001868 [exp] 360 / 2e-125 AT5G24090 332 / 1e-114 chitinase A (.1) Lus10010137 [exp] 355 / 9e-124 AT5G24090 330 / 1e-113 chitinase A (.1) Lus10037984 [exp] 335 / 1e-113 AT5G24090 322 / 1e-108 chitinase A (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.014G091700 [exp] 443 / 3e-158 AT5G24090 340 / 1e-117 chitinase A (.1) Potri.002G165700 [exp] 439 / 1e-156 AT5G24090 396 / 9e-140 chitinase A (.1) Potri.002G242000 [exp] 419 / 6e-149 AT5G24090 387 / 3e-136 chitinase A (.1) Potri.014G091600 [exp] 387 / 3e-136 AT5G24090 362 / 3e-126 chitinase A (.1) Potri.015G024200 [exp] 374 / 6e-131 AT5G24090 407 / 4e-144 chitinase A (.1) Potri.012G033866 [exp] 359 / 3e-125 AT5G24090 352 / 3e-122 chitinase A (.1) Potri.014G092800 [exp] 352 / 3e-122 AT5G24090 345 / 2e-119 chitinase A (.1) Potri.015G024100 [exp] 351 / 3e-122 AT5G24090 336 / 4e-116 chitinase A (.1) Potri.015G024000 [exp] 351 / 3e-122 AT5G24090 337 / 2e-116 chitinase A (.1) Potri.015G024150 [exp] 350 / 2e-121 AT5G24090 329 / 3e-113 chitinase A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00704 [flax] [poplar] Glyco_hydro_18 Glycosyl hydrolases family 18
Representative CDS sequence Show only first row Show all	>Lus10037985 pacid=23163765 polypeptide=Lus10037985 locus=Lus10037985.g ID=Lus10037985.BGIv1.0 annot-version=v1.0 ATGGCATTCGGGCAAACCATGACAACGGTGATCTTCCTATCAGCAATTCTGGCCATACTGGCAATGGTTTCGGAAGCCGGAAGAATATCAATCTACTGGG GACAGAACGACGATAAAGAAGGCACCCTAGCTGAGACTTGTGCAACAGGAAACTACCATTATGTCAACATAGCTTTCCTGTCAGCATTTGGAAATGGACA ACAACCAGAAATCAACCTTTCGGGCCACTGCGATCCTACCAACAGCGGCTGTGCAGGTCTAAGCTCTGACATCAAGTCGTGGCAAGCTAAAGGGATTAAA GTACTGCTTTCAATCGGCGGGGGAGCAGGTGGTTATGATCTAGCTTCAACCCATGACGCAGATCAAGTTGCAGGTTACCTTTGGGACAACTTCTTGGGTG GACACTCTTCTACGCGTCCACTTGGTCCGGCTGTACTTGATGGGATTGACTTCGACATCGAAGGAGGCAAAGGCAAGCACTGGGATCATCTTGCAACATC TTTGAGAGGTCATGATGGAAATGTCATGCTCACTGCAGCTCCTCAGTGCCCATTCCCTGATGCTTGGATAGGAAGTGCACTTCAGACTGGACTGTTTGAC TATGTTTGGGTTCAATTCTATAACAACCCTCCTTGCCAGTATGCTTCTGGGAGTATCACAAACCTTGAAGATGCATGGAAGCAATGGACTTCTGCGATTC CCGCAAAGAAGATCTTCCTTGGATTGCCTGCTGCACCGGATGCAGCTGGGAGCGGTTTCATCCCAGCAACTGACCTCAAATCTCAGGTCCTCCCTGTGAT CAAGGACAGTTCCAAGTATGGTGGTGTGATGCTGTGGTCAAAGTTCTATGACGATGAAACTGGTTACAGCAAATCCATCAAGAACTCTGTCTAA
AA sequence Show only first row Show all	>Lus10037985 pacid=23163765 polypeptide=Lus10037985 locus=Lus10037985.g ID=Lus10037985.BGIv1.0 annot-version=v1.0 MAFGQTMTTVIFLSAILAILAMVSEAGRISIYWGQNDDKEGTLAETCATGNYHYVNIAFLSAFGNGQQPEINLSGHCDPTNSGCAGLSSDIKSWQAKGIK VLLSIGGGAGGYDLASTHDADQVAGYLWDNFLGGHSSTRPLGPAVLDGIDFDIEGGKGKHWDHLATSLRGHDGNVMLTAAPQCPFPDAWIGSALQTGLFD YVWVQFYNNPPCQYASGSITNLEDAWKQWTSAIPAKKIFLGLPAAPDAAGSGFIPATDLKSQVLPVIKDSSKYGGVMLWSKFYDDETGYSKSIKNSV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G24090		ATCHIA	chitinase A (.1)		Lus10037985 [exp]	0	1
AT3G26880			Plant self-incompatibility pro...		Lus10025935 [exp]	1.0	0.8383
AT1G66230	MYB	ATMYB20	myb domain protein 20 (.1)		Lus10004043 [exp]	4.2	0.8037
AT4G32110			Beta-1,3-N-Acetylglucosaminylt...		Lus10007569 [exp]	10.9	0.7452
AT1G19250		FMO1	flavin-dependent monooxygenase...		Lus10023940 [exp]	15.5	0.7488
AT4G21380		ARK3	receptor kinase 3 (.1)		Lus10018405 [exp]	16.0	0.7856
AT2G40000		ATHSPRO2	ARABIDOPSIS ORTHOLOG OF SUGAR ...		Lus10040215 [exp]	25.5	0.7786
AT4G00230		XSP1	xylem serine peptidase 1 (.1)		Lus10009313 [exp]	33.2	0.7921
AT5G24090		ATCHIA	chitinase A (.1)		Lus10009216 [exp]	36.4	0.7583
AT2G28380		DRB2	dsRNA-binding protein 2 (.1)		Lus10003362 [exp]	50.7	0.7206
AT3G21510		ATHP3, AHP1	histidine-containing phosphotr...		Lus10000926 [exp]	52.9	0.7523

Compare expression of checked genes

Lus10037985 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.