Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G15910 639 / 0 FDM1 factor of DNA methylation 1, XH/XS domain-containing protein (.1) AT4G00380 621 / 0 FDM2 factor of DNA methylation 2, XH/XS domain-containing protein (.1) AT1G80790 590 / 0 FDM5 factor of DNA methylation 5, XH/XS domain-containing protein (.1) AT3G48670 437 / 1e-145 RDM12, IDN2 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) AT3G12550 387 / 2e-126 FDM3 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2) AT1G13790 344 / 1e-108 FDM4 factor of DNA methylation 4, XH/XS domain-containing protein (.1) AT5G59390 283 / 2e-87 XH/XS domain-containing protein (.1) AT4G01180 277 / 2e-85 XH/XS domain-containing protein (.1) AT4G01780 221 / 8e-65 XH/XS domain-containing protein (.1) AT3G29375 173 / 2e-48 XH domain-containing protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009217 [exp] 1179 / 0 AT1G15910 639 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10026076 [exp] 729 / 0 AT1G15910 608 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10002702 [exp] 513 / 3e-175 AT3G48670 669 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000951 [exp] 508 / 1e-173 AT3G48670 670 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10037987 [exp] 449 / 4e-150 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10002703 [exp] 402 / 3e-130 AT3G48670 495 / 3e-166 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10032933 [exp] 229 / 4e-68 AT1G13790 261 / 9e-80 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Lus10000949 [exp] 215 / 1e-61 AT3G48670 319 / 2e-100 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Lus10000948 [exp] 182 / 1e-53 AT3G12550 193 / 2e-58 factor of DNA methylation 3, XH/XS domain-containing protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G181000 [exp] 773 / 0 AT1G15910 626 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Potri.010G202700 [exp] 532 / 0 AT3G48670 716 / 0.0 RNA-DIRECTED DNA METHYLATION 12, INVOLVED IN DE NOVO 2, XH/XS domain-containing protein (.1.2) Potri.010G184800 [exp] 405 / 4e-133 AT1G13790 526 / 1e-178 factor of DNA methylation 4, XH/XS domain-containing protein (.1) Potri.001G240666 [exp] 191 / 6e-54 AT1G13790 228 / 3e-67 factor of DNA methylation 4, XH/XS domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain PF03469 [flax] [poplar] XH XH domain CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10037986 pacid=23163789 polypeptide=Lus10037986 locus=Lus10037986.g ID=Lus10037986.BGIv1.0 annot-version=v1.0 ATGAGTCATTCTTCTGGATCTGACGAAGAGTCAGACATCAGTGAATCGGAGATTGTTGATCATGTGGACAAACCATATGAGCTGCTGAGATCTCAGCATT ACAAAGTGCAAGTTAACGGGACATTGAGATGCCCTTTCTGTGCTGGGAAGAAGAAACAAGGATATAAATTCAAAGAATTGCTTCAGCATGCATCCGGGGT GGGCAGGGGTTCTGCCAATAGAAGTGGCAAGCAGAAAGCTAACCATCTTGCCTTGGCAAAGTACGTGGAAGTTGATTTGGCTCATCTGGCAGATGAGACT CTGACTCGACCTACCCCACCACCCCCTGTTACCTCTCCTGATCAAGAAGACAAGTTTGCTTGGCCATGGACGGGCATTGTTGTCAACATATCTGCAAATT CTGAAGTCCAGGATGGTGACTACTGGTTGAAAGAATTTGAAATGTATAGGCCTGCAAAAGTGCATGTGTTGTGGGATGAAAAGAACCATACCGGTCAGGC CATTGTGCAATTTGACAGTGACTGGAATGGTTTCACCAAAGCAACCGATTTTGAGAAATCCTTTGAAGGTAAGCGTCATGGTAAAAAGGATTGGAAGGCA CGTGAACAAGATCTTGGCTCGAATATATATGGCTGGTGTGCACGTCGTGATGACTACGATTCGGAGGGGACAATAGGAGAGTATCTTCGTAAAGAAACAA AGTTGACAACTATTTCTGAGATTGTCAAAGAAACCAATGCAAGTAGAAATACTGTTGTAGCAAGCCTGACTGAAGAAATTGCTAAGACCAATCAAAATCT GGATAAATTACAAAGCATGTACAATGAGAATGCTATGTCATTAAGCAGAACACTTGAAGAGAAAGATAAGCTGCATCATACTTTTGTTGAAGAAACAAGG AAGATGCAGCGGCTTGCACGAGAAAATGTTCATAGAATCTTGGCTGAGCAGGAAAAAATGAACAATGAATTGGAATCGAGGAAAAGGAAAATTGATAGCT GGACTAAAGAATTAAACAAGCGAGAAGCATTGACAGATCGTGAGAGGCAAAAGCTCGAAGAAGACATGAAGAAGAATAACAAGGTAAACAATTCACTTGA ATTAGCATCCATGGAGCAAAAGAAGGCTGATGAGAATGTGCTGCGATTGGTTGAAGAGCAACAGAGGGAGAAAGAAGAGGCCTTGCGTAAAATCATTCAA CTAGAAAAGCAACTTGATGCAAAACAAAAGCTGGAAATGGAAATCCAAGAGCTAAAAGGGAAACTAAATGTGATGAAGCATCTTGAGGATCAGGATGATG CAGCTGTTAAGAAAACCATGGAAGAATACAATAAGGAGTTGGAGCAGAAGATGGACGACCTTTCTAGCGTGGAGGAATTAAATCAAACTCTCATTGTCAA AGAGCGACAGAGCAATGATGAGCTTCAAGAAGCACGTAAAACACTGATACAGGCCCTGCTAGATACATTATCTGGTCATCGCACTAACATTGGGATAAAG AGGATGGGCGAACTTGATGAGAAGGCTTTTCTTAACGGATGCAAACAGAGATTTTCAAAAGAGGAATGTGAAATGCAAGCTTCAATCCTATGCAGCTTAT GGCAGAAGCACTTGCAAGATCAAGAGTGGCATCCCTTCAAAGTCATTGTGTCTGAGGGGAATGCAAAGGAAATTCTAAACGAGGAAGATGAAAGGTTGAA AGGTCTTAAGAAGGAATGCGGTGAGGAGATCTACCATGCTGTTGTAACATCCTTGAAGGAATTGAATGAGTATAACCCAAGTGGGAGGTACACCATTCCT GAGCTCTGGAACTTCAAAGAAGGAAGGAAAGCCACATTGAAAGAAGTTATAGGTTATATCATGAAGCAAATCAAGACCATCAAGCGGAGGAAGAACTTTT AA
AA sequence Show only first row Show all	>Lus10037986 pacid=23163789 polypeptide=Lus10037986 locus=Lus10037986.g ID=Lus10037986.BGIv1.0 annot-version=v1.0 MSHSSGSDEESDISESEIVDHVDKPYELLRSQHYKVQVNGTLRCPFCAGKKKQGYKFKELLQHASGVGRGSANRSGKQKANHLALAKYVEVDLAHLADET LTRPTPPPPVTSPDQEDKFAWPWTGIVVNISANSEVQDGDYWLKEFEMYRPAKVHVLWDEKNHTGQAIVQFDSDWNGFTKATDFEKSFEGKRHGKKDWKA REQDLGSNIYGWCARRDDYDSEGTIGEYLRKETKLTTISEIVKETNASRNTVVASLTEEIAKTNQNLDKLQSMYNENAMSLSRTLEEKDKLHHTFVEETR KMQRLARENVHRILAEQEKMNNELESRKRKIDSWTKELNKREALTDRERQKLEEDMKKNNKVNNSLELASMEQKKADENVLRLVEEQQREKEEALRKIIQ LEKQLDAKQKLEMEIQELKGKLNVMKHLEDQDDAAVKKTMEEYNKELEQKMDDLSSVEELNQTLIVKERQSNDELQEARKTLIQALLDTLSGHRTNIGIK RMGELDEKAFLNGCKQRFSKEECEMQASILCSLWQKHLQDQEWHPFKVIVSEGNAKEILNEEDERLKGLKKECGEEIYHAVVTSLKELNEYNPSGRYTIP ELWNFKEGRKATLKEVIGYIMKQIKTIKRRKNF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G15910		FDM1	factor of DNA methylation 1, X...		Lus10037986 [exp]	0	1
AT3G02680		ATNBS1, NBS1	nijmegen breakage syndrome 1 (...		Lus10007365 [exp]	1.4	0.8732
AT2G34900		GTE1, GTE01, IM...	IMBIBITION-INDUCIBLE 1, GLOBAL...		Lus10029774 [exp]	4.2	0.8479
AT5G20510	Alfin	AL5	alfin-like 5 (.1)		Lus10037655 [exp]	5.3	0.8677
AT4G23860			PHD finger protein-related (.1...		Lus10023084 [exp]	7.2	0.8586
AT3G54170		ATFIP37	FKBP12 interacting protein 37 ...		Lus10039948 [exp]	7.3	0.8548
AT5G13020		AtEML3, ACK1	EMSY-like 3, Emsy N Terminus (...		Lus10004188 [exp]	7.5	0.8619
AT2G47580		U1A	spliceosomal protein U1A (.1)		Lus10003358 [exp]	7.7	0.8577
AT4G17760			damaged DNA binding;exodeoxyri...		Lus10030971 [exp]	7.7	0.8419
AT5G65530			Protein kinase superfamily pro...		Lus10035949 [exp]	8.8	0.8206
AT5G45600		TAF14b, GAS41	TBP-ASSOCIATED FACTOR 14B, GLI...		Lus10007555 [exp]	9.2	0.8503

Compare expression of checked genes

Lus10037986 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.