Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54570 662 / 0 BGLU41 beta glucosidase 41 (.1) AT1G26560 566 / 0 BGLU40 beta glucosidase 40 (.1) AT3G18080 440 / 4e-148 BGLU44 B-S glucosidase 44 (.1) AT3G18070 422 / 1e-141 BGLU43 beta glucosidase 43 (.1.2) AT5G36890 409 / 1e-136 BGLU42 beta glucosidase 42 (.1.2) AT5G24550 404 / 4e-134 BGLU32 beta glucosidase 32 (.1) AT2G44480 398 / 7e-132 BGLU17 beta glucosidase 17 (.1.2) AT3G60140 395 / 9e-130 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT2G44470 393 / 7e-129 BGLU29 beta glucosidase 29 (.1.2.3) AT2G44450 388 / 6e-128 BGLU15 beta glucosidase 15 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009218 [exp] 870 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037988 [exp] 865 / 0 AT5G54570 741 / 0.0 beta glucosidase 41 (.1) Lus10037098 [exp] 540 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 540 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10036885 [exp] 539 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10026657 [exp] 458 / 2e-149 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10037986 [exp] 446 / 8e-149 AT1G15910 645 / 0.0 factor of DNA methylation 1, XH/XS domain-containing protein (.1) Lus10031235 [exp] 437 / 4e-147 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10009644 [exp] 434 / 1e-145 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G409900 [exp] 697 / 0 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.008G094200 [exp] 546 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 538 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.015G041300 [exp] 440 / 3e-148 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 435 / 4e-146 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.T085301 [exp] 433 / 1e-145 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 433 / 2e-145 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.001G222900 [exp] 419 / 7e-140 AT2G44480 526 / 0.0 beta glucosidase 17 (.1.2) Potri.004G109166 [exp] 417 / 2e-139 AT5G42260 525 / 0.0 beta glucosidase 12 (.1) Potri.002G219600 [exp] 417 / 2e-139 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF03470 [flax] [poplar] zf-XS XS zinc finger domain CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1 CL0221 [flax] [poplar] RRM PF03468 [flax] [poplar] XS XS domain
Representative CDS sequence Show only first row Show all	>Lus10037987 pacid=23163926 polypeptide=Lus10037987 locus=Lus10037987.g ID=Lus10037987.BGIv1.0 annot-version=v1.0 ATGAGTCATTCTTCTGGATCTGACGAAGAGTCTGACATCAGCGAGTCGGAGATTATTGATCATGTGGACAAACCATATGAGCTGCTGAGATCTCAGTATT ACAAAGTGCAAGTTAACGGGACATTGAGATGCCCTTTCTGTGCTGGGAAGAAGAAACAAGGATATAAATTCAAAGAATTGCTTCAGCATGCATCCGGGGT GGGCAGGGGTTCTGCCAATAGAAGTGGCAAGCAGAAAGCTAACCATCTTGCCTTGGCAAAGTACGTGGAAGTTGATTTGGCTCATCTGGCAGATGAGACT CTGACTCGACCTATCCCACCACCCCCTGTTACCTCTCCTGATCAAGAAGACAAGTTTGCATGGCCATGGACGGGCATTGTTGTCAACATATCTGCAAATT CTGAAGTCCAGGATGGTGACTACTGGTTGAAAGAATTTGAAATGTATAGGCCTGCAAAAGTGCATGTGTTGTGGGATGAAAAGAACCATACCGGTCAGGC CATTGTGCAATTTGACAGTGACTGGAATGGTTTCACCAAAGCAACCGATTTTGAGAAATCCTTTGAAGGTAAGCGTCATGGTAAAAAGGATTGGAAGGCA CGTGAACAAGATCTTGGCTCGAATATATATGGCTGGTGTGCACGTCGTGATGACTACGATTCGGAGGGGACAATAGGAGAGTATCTTCGTAAAGAAACAA AGTTGACAACTATTTCTGGGATTGTCCAAGAAACCAATGATGATATAGGGTTGATGAAAGATTTGGGAATGGATGCCTACAGATTCTCCATCTCGTGGAC AAGAATCTTTCCAAATGGAACAGGGAATCTAAACCCAGAAGGCATAACATATTACAACAAACTCATTGATGGGTTACTAGAAAAAGGAATCAAGCCTTAT GTGACTTTATATCACTGGGATCTTCCGCAGATGCTTCAGGACAAGTATGGAGGCTGGTTGGACAAGAAAATTATAGAGGACTTTGAGCATTATGCTAACA CCTGCTTCAAGGCATTTGGAGATAGAGTGAAAAACTGGATTACCTTCAATGAACCTCACAACTTTGCCATCCAGAGCTATGATTTTGGCATTCAAGCCCC TGGGAGATGCTCCATTATTGGTCATCTATTCTGCAAGGAAGGAAATTCGTCGGCTGAACCATATATAGTAGCTCACCACATCCTCTTGTCACATGCAGCT GCTTATCACAGCTACCAGTCACATTTCAAGGGGAAACAAGGAGGTCGCATTGGGATAGTATTAGATGCCAAATGGTTCGAACCAAAATCTGATGCTGATG AGGACAAAGATGCTGCAAATAGAGCAATGGACTTCACACTTGGATGGTTTCTTGATCCAATTTTCGTTGGCCGATACCCACTTTCAATGAGAAAGCTTGC TGGTGAACGACTACCTGAGATCTCTTCAGAGATGGCAAAGCTAATTACGGGGTCAGTGGACTTTGTTGGCCTCAACCATTACACAACATCTTATGTTCGG AACGACAGAACTAGGTTTCAGAAGCTGATACTGCAAGACGCTTCCACTGATTCTGCCTTCATTACTTCCTCTTACAGGAATGGAATTGCTATTGGAGAAA AAGCAGCATCCAGTTGGCTAAGGATTGTCCCTTGGGGTATCCGGAAGTTGATGAATTATGTAAAAGATAAGTATGGAAACCCACTTGTGATCATAACAGA GAATGGAATGGATGATCCCAATAGCCCATTCATATCAAGAGAAAAGGCATTGCAGGATGAGAAAAGGATAGAGTACCACAGAGATTATCTCTCAAACCTG TCTGCATCCATAAGGGAAGACGGGTGCAATGTAGGAGGGTATTTCATATGGTCATTGCTAGACAACTGGGAATGGAACTCGGGGTACACAGTCCGGTTCG GGCTATACTATGTTGACTACAGTCATAACCTCACAAGGATACCAAAAGCTTCTGTAAATTGGTTCAAAAGTATGCTGAGATCACAAAGTACTGAACTTGA TAGCCAGAGTTGA
AA sequence Show only first row Show all	>Lus10037987 pacid=23163926 polypeptide=Lus10037987 locus=Lus10037987.g ID=Lus10037987.BGIv1.0 annot-version=v1.0 MSHSSGSDEESDISESEIIDHVDKPYELLRSQYYKVQVNGTLRCPFCAGKKKQGYKFKELLQHASGVGRGSANRSGKQKANHLALAKYVEVDLAHLADET LTRPIPPPPVTSPDQEDKFAWPWTGIVVNISANSEVQDGDYWLKEFEMYRPAKVHVLWDEKNHTGQAIVQFDSDWNGFTKATDFEKSFEGKRHGKKDWKA REQDLGSNIYGWCARRDDYDSEGTIGEYLRKETKLTTISGIVQETNDDIGLMKDLGMDAYRFSISWTRIFPNGTGNLNPEGITYYNKLIDGLLEKGIKPY VTLYHWDLPQMLQDKYGGWLDKKIIEDFEHYANTCFKAFGDRVKNWITFNEPHNFAIQSYDFGIQAPGRCSIIGHLFCKEGNSSAEPYIVAHHILLSHAA AYHSYQSHFKGKQGGRIGIVLDAKWFEPKSDADEDKDAANRAMDFTLGWFLDPIFVGRYPLSMRKLAGERLPEISSEMAKLITGSVDFVGLNHYTTSYVR NDRTRFQKLILQDASTDSAFITSSYRNGIAIGEKAASSWLRIVPWGIRKLMNYVKDKYGNPLVIITENGMDDPNSPFISREKALQDEKRIEYHRDYLSNL SASIREDGCNVGGYFIWSLLDNWEWNSGYTVRFGLYYVDYSHNLTRIPKASVNWFKSMLRSQSTELDSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037987 [exp]	0	1
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10009218 [exp]	1.7	0.8844
AT1G09020		ATSNF4, SNF4	homolog of yeast sucrose nonfe...		Lus10037504 [exp]	7.5	0.8252
AT5G11200			DEAD/DEAH box RNA helicase fam...		Lus10014260 [exp]	9.5	0.8545
AT5G55300		MGO1, TOP1BETA,...	TOPOISOMERASE 1, MGOUN 1, DNA ...		Lus10032573 [exp]	9.7	0.8728
AT1G48950			C3HC zinc finger-like (.1)		Lus10027238 [exp]	9.7	0.8328
AT5G61060		HDA5, HDA05, AT...	histone deacetylase 5 (.1.2)		Lus10034689 [exp]	10.4	0.8570
AT3G07565			Protein of unknown function (D...		Lus10027044 [exp]	10.9	0.7950
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Lus10027599 [exp]	11.1	0.8707
AT1G42440			unknown protein		Lus10013232 [exp]	15.3	0.8572
AT3G24440		VRN5, VIL1	VERNALIZATION 5, VIN3-LIKE 1, ...		Lus10019393 [exp]	15.7	0.8369

Compare expression of checked genes

Lus10037987 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.