Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54570 738 / 0 BGLU41 beta glucosidase 41 (.1) AT1G26560 614 / 0 BGLU40 beta glucosidase 40 (.1) AT3G18080 485 / 2e-167 BGLU44 B-S glucosidase 44 (.1) AT3G18070 466 / 4e-160 BGLU43 beta glucosidase 43 (.1.2) AT5G36890 456 / 2e-156 BGLU42 beta glucosidase 42 (.1.2) AT5G24550 446 / 1e-151 BGLU32 beta glucosidase 32 (.1) AT2G44470 437 / 1e-147 BGLU29 beta glucosidase 29 (.1.2.3) AT3G60140 436 / 2e-147 BGLU30, SRG2, DIN2 SENESCENCE-RELATED GENE 2, DARK INDUCIBLE 2, BETA GLUCOSIDASE 30, Glycosyl hydrolase superfamily protein (.1) AT5G42260 433 / 5e-147 BGLU12 beta glucosidase 12 (.1) AT5G44640 432 / 6e-147 BGLU13 beta glucosidase 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009218 [exp] 952 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10037987 [exp] 863 / 0 AT5G54570 662 / 0.0 beta glucosidase 41 (.1) Lus10036885 [exp] 592 / 0 AT1G26560 778 / 0.0 beta glucosidase 40 (.1) Lus10004654 [exp] 589 / 0 AT1G26560 773 / 0.0 beta glucosidase 40 (.1) Lus10037098 [exp] 589 / 0 AT1G26560 785 / 0.0 beta glucosidase 40 (.1) Lus10026657 [exp] 512 / 3e-172 AT1G26570 856 / 0.0 UDP-glucose dehydrogenase 1 (.1) Lus10031235 [exp] 496 / 9e-172 AT2G44450 590 / 0.0 beta glucosidase 15 (.1) Lus10009644 [exp] 480 / 4e-165 AT3G18080 812 / 0.0 B-S glucosidase 44 (.1) Lus10031234 [exp] 478 / 2e-164 AT2G44480 563 / 0.0 beta glucosidase 17 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G409900 [exp] 776 / 0 AT5G54570 791 / 0.0 beta glucosidase 41 (.1) Potri.008G094200 [exp] 603 / 0 AT1G26560 798 / 0.0 beta glucosidase 40 (.1) Potri.010G159900 [exp] 595 / 0 AT1G26560 795 / 0.0 beta glucosidase 40 (.1) Potri.T085301 [exp] 484 / 4e-167 AT5G44640 575 / 0.0 beta glucosidase 13 (.1) Potri.003G211100 [exp] 484 / 7e-167 AT5G44640 569 / 0.0 beta glucosidase 13 (.1) Potri.015G041300 [exp] 480 / 1e-165 AT3G18080 839 / 0.0 B-S glucosidase 44 (.1) Potri.012G049300 [exp] 474 / 4e-163 AT3G18080 831 / 0.0 B-S glucosidase 44 (.1) Potri.010G178800 [exp] 465 / 7e-160 AT5G36890 714 / 0.0 beta glucosidase 42 (.1.2) Potri.001G015100 [exp] 461 / 4e-158 AT5G44640 553 / 0.0 beta glucosidase 13 (.1) Potri.002G219600 [exp] 457 / 2e-156 AT2G44480 525 / 0.0 beta glucosidase 17 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00232 [flax] [poplar] Glyco_hydro_1 Glycosyl hydrolase family 1
Representative CDS sequence Show only first row Show all	>Lus10037988 pacid=23163721 polypeptide=Lus10037988 locus=Lus10037988.g ID=Lus10037988.BGIv1.0 annot-version=v1.0 ATGGCCGCTGCAATTTCTCCTTTGATAATCATCATCATATACCTTCTCGTAACAATTCTTCACCTTGTTACCCCAGAATCTATAAGCAGAGCTCATTTCC CTGATGGGTTCATCTTTGGGACAGCCTCTTCTGCTTATCAAGTTCTCTTTCCTTCTCAACTCAATAAAACTGTTCCTGAAGCTGTCTGGTTTTTGAAGAA GAGCATATCGATAATCAAATTTCTCCATTTTCAGTTTGAAGGAGCTGCAACCGAAGGAAATAAAGGAGCTAGCATATGGGATACCTTCACAAGAAAGCCC GGGAGAATTTTGGATTTCAGCAATGCTGATATCGCTGTTGATCAATACCACAGGTTTCAGGATGATATAGGGTTGATGAAAGATTTGGGAATGGATGCCT ACAGATTCTCCATCTCGTGGACAAGAATCTTTCCAAATGGAACAGGGAATCTAAACCCAGAAGGCATAACATATTACAACAAACTCATTGATGGGTTGCT AGAAAAAGGAATCAAGCCTTATGTGACTTTATATCACTGGGACCTTCCGCAGATGCTTCAGGACAAGTATGGAGGCTGGTTGGACAAGAAAATTATAGAG GACTTTGAGCATTATGCTAACACCTGCTTCAAGGCATTTGGAGATAGAGTGAAAAACTGGATTACCTTCAATGAGCCTCACAACTTTGCCATCCAGAGCT ATGATTTTGGGATTCAAGCTCCTGGGAGATGCTCCATTATTGGTCATCTATTCTGTAAGGAAGGAAATTCATCATCTGAACCATATATAGTAGCTCACCA CATCCTCTTGTCACATGCAGCTGCTTATCACAGCTACCAGTCACATTTCAAGGGGAAACAAGGAGGTCGCATTGGGATAGTATTAGATGCCAAATGGTTC GAACCAAAGTTTGATGCTGATGAGGACAAAGATGCTGCAAATAGAGCAATGGACTTCACACTTGGATGGTTTCTTGATCCAATTTTCGTTGGCCGATACC CACTTTCAATGATAAAGCTTGCCGGTGAACGACTACCTGAGATCTCTTCAGAGATGGCAAATCTAATTATGGGGTCAGTGGACTTTATTGGCCTCAACCA TTACACAACATCTTATGTTCGGAACGACAGAACTAGGTTTCAGAAGCTGATACTGCAAGACGCTTCCACTGATTCTGCCTTCATTACTTCCTCTTACAGG AATGGAATTGCTATTGGAGAAAAAGTAAGCCCTACTGGAGAACTTACCCTGTTGCATACATCAGCAGCATCCAGTTGGCTAAGGATTGTCCCTTGGGGCA TCCGGAAGTTGATGAATTATGTAAAAGATAAGTATGGAAACCCACTTGTGATCATAACAGAGAATGGAATGGATGATCCCAATAGCCCATTCATATCAAG AGAAAAGGCATTGCAGGATGAGAAAAGGATAGAGTACCACAGAGATTATCTCTCAAACCTGTCTGCATCCATAAGGGTAGACGGGTGCAACGTAGGAGGG TATTTCATATGGTCATTGCTAGACAACTGGGAATGGAACTCGGGATACACCGTCCGGTTCGGGCTATACTATGTTGACTATAGTCATAACCTCACAAGGA TACCAAAAGCTTCTGTAAATTGGTTCAAACGTATGCTGAGATCACAAAGTACTGAACTTGATAGCCAGAGTTGA
AA sequence Show only first row Show all	>Lus10037988 pacid=23163721 polypeptide=Lus10037988 locus=Lus10037988.g ID=Lus10037988.BGIv1.0 annot-version=v1.0 MAAAISPLIIIIIYLLVTILHLVTPESISRAHFPDGFIFGTASSAYQVLFPSQLNKTVPEAVWFLKKSISIIKFLHFQFEGAATEGNKGASIWDTFTRKP GRILDFSNADIAVDQYHRFQDDIGLMKDLGMDAYRFSISWTRIFPNGTGNLNPEGITYYNKLIDGLLEKGIKPYVTLYHWDLPQMLQDKYGGWLDKKIIE DFEHYANTCFKAFGDRVKNWITFNEPHNFAIQSYDFGIQAPGRCSIIGHLFCKEGNSSSEPYIVAHHILLSHAAAYHSYQSHFKGKQGGRIGIVLDAKWF EPKFDADEDKDAANRAMDFTLGWFLDPIFVGRYPLSMIKLAGERLPEISSEMANLIMGSVDFIGLNHYTTSYVRNDRTRFQKLILQDASTDSAFITSSYR NGIAIGEKVSPTGELTLLHTSAASSWLRIVPWGIRKLMNYVKDKYGNPLVIITENGMDDPNSPFISREKALQDEKRIEYHRDYLSNLSASIRVDGCNVGG YFIWSLLDNWEWNSGYTVRFGLYYVDYSHNLTRIPKASVNWFKRMLRSQSTELDSQS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G54570		BGLU41	beta glucosidase 41 (.1)		Lus10037988 [exp]	0	1
AT1G53210			sodium/calcium exchanger famil...		Lus10033629 [exp]	1.7	0.9473
AT5G18980			ARM repeat superfamily protein...		Lus10034018 [exp]	3.5	0.9356
AT3G14250			RING/U-box superfamily protein...		Lus10024093 [exp]	3.5	0.9466
AT2G14095			unknown protein		Lus10035649 [exp]	4.2	0.9442
AT1G11190		ENDO1, BFN1	ENDONUCLEASE 1, bifunctional n...		Lus10011232 [exp]	7.4	0.8821
AT3G06860		ATMFP2, ATMPF2,...	multifunctional protein 2 (.1)		Lus10006501 [exp]	8.5	0.8909
AT2G01300			unknown protein		Lus10004062 [exp]	8.9	0.9109
AT1G11910		ATAPA1, APA1	aspartic proteinase A1 (.1)		Lus10020024 [exp]	11.5	0.9033
AT2G46550			unknown protein		Lus10012748 [exp]	12.4	0.8780
AT4G17830			Peptidase M20/M25/M40 family p...		Lus10040090 [exp]	12.7	0.8881

Compare expression of checked genes

Lus10037988 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.