Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G04240 682 / 0 JUMONJI ELF6 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) AT3G48430 306 / 4e-85 JUMONJI JMJ12, REF6 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) AT5G46910 199 / 2e-52 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G20400 162 / 3e-40 PKDM7B, JMJ14 JUMONJI 14 (.1.2) AT1G08620 158 / 1e-38 PKDM7D Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT1G63490 152 / 5e-37 transcription factor jumonji (jmjC) domain-containing protein (.1) AT2G34880 151 / 5e-37 PKDM7C, MEE27 maternal effect embryo arrest 27, Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT1G30810 150 / 1e-36 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) AT2G38950 108 / 2e-23 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) AT4G06634 48 / 4e-05 C2H2ZnF zinc finger (C2H2 type) family protein (.1), zinc finger (C2H2 type) family protein (.2), zinc finger (C2H2 type) family protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009218 [exp] 2575 / 0 AT5G04240 993 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Lus10019482 [exp] 267 / 3e-72 AT3G48430 984 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10030988 [exp] 200 / 1e-52 AT5G46910 850 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10035385 [exp] 199 / 2e-52 AT5G46910 843 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Lus10043332 [exp] 189 / 5e-48 AT3G48430 877 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Lus10042566 [exp] 160 / 6e-39 AT3G04490 1382 / 0.0 unknown protein Lus10022024 [exp] 159 / 8e-39 AT3G04490 1370 / 0.0 unknown protein Lus10008495 [exp] 157 / 3e-38 AT1G63490 916 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Lus10008063 [exp] 153 / 2e-37 AT1G30810 901 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G224700 [exp] 1100 / 0 AT5G04240 956 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.008G037800 [exp] 1090 / 0 AT5G04240 997 / 0.0 EARLY FLOWERING 6, Zinc finger (C2H2 type) family protein / transcription factor jumonji (jmj) family protein (.1) Potri.015G089000 [exp] 330 / 5e-92 AT3G48430 807 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.012G092400 [exp] 322 / 9e-90 AT3G48430 803 / 0.0 Jumonji domain-containing protein 12, relative of early flowering 6 (.1) Potri.001G137700 [exp] 199 / 3e-52 AT5G46910 893 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.003G096100 [exp] 198 / 1e-51 AT5G46910 924 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1) Potri.013G046700 [exp] 157 / 2e-38 AT1G08620 1281 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.019G018700 [exp] 157 / 3e-38 AT1G08620 1260 / 0.0 Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.1), Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein (.2) Potri.003G126600 [exp] 155 / 9e-38 AT1G63490 1013 / 0.0 transcription factor jumonji (jmjC) domain-containing protein (.1) Potri.001G440900 [exp] 153 / 4e-37 AT4G20400 733 / 0.0 JUMONJI 14 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF02375 [flax] [poplar] JmjN jmjN domain CL0029 [flax] [poplar] Cupin PF02373 [flax] [poplar] JmjC JmjC domain, hydroxylase
Representative CDS sequence Show only first row Show all	>Lus10037989 pacid=23163801 polypeptide=Lus10037989 locus=Lus10037989.g ID=Lus10037989.BGIv1.0 annot-version=v1.0 ATGGGAAACGTGGAAATACCGAAATGGCTGCAAGGGTTGCCACTGGCTCCCGAGTTCCGGCCAACTGATACGGAATTCGCTGACCCGATTGCTTATATTT CGAAAATTGAGAAGGAAGCCGGTGCTTTTGGGATATGCAAGATTATCCCACCTCTACCTAAACCTTCCAAGAAATATGTGTTTTCCAATCTGAATAAGAC CCTTGCAAAATCGCCTGAATTGGGGGATAATTGTTCCTCTTTGAAATCGGGTTCTGGGGTTGATGGTAGAGATGGAGATATGAGGGCGGTGTTTACGACA AGGCACCAAGAACTAGGACAGAGTATCAAGAAGAAGGGTGTCGAAAAGGAGACTCCGCAAATGGTTTTTCATAAACAAGTGTGGCAAAGTGGAGAGGTCT ATACATTGGAACAGTTCGAATCTAAGTCCAAGGCCTTTGCAAAGAGTATGTTGGGTTCAGTTAAGGAGGTTAGTCCTTTAGTCATAGAGGCCCTGTTCTG GAAGGCAGCTTTTGAGAAACCAATCTATGTGGAATATGCAAATGATGTGCCTGGGTCAGCTTTCGGAGAACCAGAAGGTCAATTTCGGTATTTTAACCGA CGGAGAAGGAGAAGGGCATCATACCAATCCTACCGAAGGCATGGGGAAAGCTACAATTGCCAGAACAATGAATTGATAGCTGTTGATAATATTGTACCTG ATGAGGTGGTTGATGCTTCTATTAAAAATGATCCAAGTCCATCGTCTCTGTCTACTTCATCAACTGCACTTTCATCCAGATTTGTGAAATCTTATAACCG AAAAGGTGAAAGTTCTAGTTGCAATGTGGAGGGCACAGCAGGCTGGAAGCTTTCTAACAGCCCTTGGAATCTCCAATTGATTGCTCGTTCACCTGGGTCC CTCACACGCTATATGCCAGATGATATCCCAGGGGTTACTTCTCCTATGGTTTATATTGGTATGTTATACAGTTGGTTTGCTTGGCATGTTGAGGATCATG AGCTTCACAGCATGAATTTTCTCCATACTGGCTCTCCAAAAACATGGTATTCTGTTCCCGGAGATTATGCTTTTTCTTTTGAGGAGGTTATCCGCAGACA GGCTTATGGTGGTAAATTGGATCGTTTAGCTTCTTTGTCAAGGTTGGGTGAGAAGACAACCCTTCTGTCACCTGATGTAGTTGTTTCATCTGGCATTCCT TGTTGCAGGTTAATCCAGAACCCGGGTGAGTTTGTTGTGACTTTTCCAAGGGCTTATCATGTAGGATTCAGCCACGGTTTTAATTGTGGAGAAGCTGCTA ATTTTAGTACTCCGCAATGGCTTGAAGTAGCTAAGGAAGCTGCAGTACGTAGAGCTGCTATGAATTACCTTCCAATGCTTTCGCATCAGCAACTACTATA CCTGTTGACAATGTCTTTTGTCCTAAGAGTCCCAAGGTCACTCCTTCCTGGTGCTAGGAGTTCTCGCCTAAGAGATCGCCAGAAAGAAGAAAGAGAGTTG TCTGTGAAGAGGGCTTTTATAGAAGATCTACTACGAGAGAATAATACTTTACGCACTATTCTCAGAAAAGGTCCTGGTTGTAAAGCTGTGATATGGAATC CTGATTTGCTACCTCGTGCAAGTAAACAATCTCAATTGATTGATACCCGTGCTGCTGCTACCAGAATGGAAGAAAATTTATATCATACTCGGCCTGAACA TAACAATAACAGTACAAGCAATCTGTTTACAGAAATGAGCAAGTATGTTGAGTCTTTAAATGATTTATATGCTGATGGAGGTGATATCTCATGTGATTTT CAAGTCGATTCTGGGTCACTGGTTTGTATAGCTTGTGGAATCCTTGGTTTTCCATTCATGTCTGTGGTGCAACCATCTGATAAAGCTTCAGAAGAGTCGT TATATGTGGATCATACTTTGATTAGTGATGGAAAAGCAACATTCAGAAGGGTCCATTCTTCTGCAGATCGCAATGGTTTTGCTCTGTATTTGTTAGATAA TCCTCATCCTGTGCCTGACCCAAGTCCAGCTCTAAAAGATCTTAAAGTGCCTACTGGATGGGATATTTCCAATAAATTTCTCAGGCCACGGATTTTCTGC CTGGAGCATGGCCTTCAAATTTGTGAGCTTTTACAGTCTAGAGGTGGAGCAAACATGCTTGTAATTTGCCATTCAGATTTTCAGAAAATGAAGGCCTATG CTACTTCTATTGTGGAGGAGATCAATGTTCCTTTTGACTACACCCAGATTCCACTAGAAAGCGCGTTGAACGAAGATTTGAACTTGATTGACCTTGCGAT TGATGGCCATGACTGGGATGGACGTGGGGAGGATTGGACATCCAAAATGGGTGTCAACTTACTACACTGTGTGAAGATCCGGAAAAAGTCTCCATCAACG CAAGTGCATCATGCATTGGCTTTAGCAGGACTCTTTACTGAAGGAAGTCTCAGTTCGGAGTTCTCTACACTTAAATGGAAATCCAGAAGATCTCGGTCAA GGAACAAGTTGAATCATTCTGTCAGTTTTTCAGGTGGAAAGTTTGAGTCTAAGAAAGATGATGCGCTGGAGAAAGTTTCAGATAGTGTAGCCAAAAAAGA AGAAAAGCTTCTATGCTATACAAGACGGAAGTCTAAAACCAAAGAAGATTGTTCTGTAAATGGTGGTCAAGATCGGCTACTCAACCGGCAAACCAGCAGG GTTTCTCGAAACAGTAAGGTAGGAATAAATAGTTTGGAGGATCTTGGGGTCAATCCTGATGGGGTTTCTGAAAACCACAATGGTGTTCAGTTTCATGAAG CTACTGCTACCACGACTGCAATTGTGAATTCTGAGCCTTCAGTAGATGCGACATGTTCTGCTGTCATGTCTGATCCAGAAGCCTTCTGTAATTCTGAAAT TCGGGATGGCAAAACTGCTGCATTAGAAAGCAGTGAGCGCGGGCTCAATTCTATTGTAGCTACAGATAATGGGTTATTGGTGATTTGCAAAGATGATACT GAAAATATGATCACTTATGATAGAGCTTCTAAAAGGCAGCTCAATCTCCAGGTGGATAGAGATGGTCTCGTCAGTGAGACCTCAGGTATTGCTAATTCAC CTTCAGCTGAAGCTGAGCTTGTAGTAGCTGAGACTTCTTGCACAAAGCGTGAAGCTTGTAATCGTGTGACTTCACAGAGTGAGCAACAGGAAGAAGGCCA AAAATGGCCTAATAGCAATCATGTTATTTCATCTAATGAGACAGTGACTACGGAGACCATTACATTGAATGGTGAAGCTTGCGAGCAGTTGCAAGACATC TCTCTTGTAGAAGACGCTGTGCAGCAACAAATTGAAACAGAATGTTGTGATGATAGGGAGGAAATGATGCAGTCGAAACTTCAATCAGCAGAAGAGCCAG ACTTGGGGCCTTTGGATGGAAGTGGAAGCTCTGAGAGTGTTAGGGAGCAAATAGACCTCCCAGTTACAAACCAAGAGCTAGCTTCCAGTTCCACCTCAGA AATGGAGGATCAGCCTATTCCTGAAACAATGGAAGCATGCTGCGAGCCTTGTGCAACTAGTCGTACTGATGAAGATTCATCTGCTTTTAAGAATTCAGAT GGAGAACTAGAGCAAGTAAATAACTCATTTGATAGGATGCCAGAGTGTTTTGAAATTCGGACGGGTTCTGAAATGGATGAAGAGTCGTCTGCTGTAAGAA GTGCAGTTGAAGAAAAAAGATCATCTCCACCACACGGACATGGAAGTATTGAGTCTGCTAGTTCTGGATCAATCCATATCAAGGTCAGAAAGAGGAGAAG AGAAGTGGACCAGATAACAGAAGGTAATCTCAATTTCAAGAGCTTCGTTAGAAGTCCATGTGAAAGGTTGAGACCAAGAAGAATGGGCAGAGATGACCCA AGCACAAGCGGAGCTGATTTGGAAAAAATTCCTGTGGAGAATGCAGTAGCAAAGAGGTCGAGGTTGAAGAGGCCTTCAAATGATCCAGTTAATAATCAGT TGAAGAAAAAACAGGTGACAAAGAGACCTCACAAGTGTGAAATAGAAGGTTGCGGCATGAGATTTGAGACAAAGGAAGACCTAGCCTTGCACAGTCGCAA TCGATGCCCATATGAAGGATGCAGGAAGAAATTTAGTTCACACAGGTATGCATTGATACATCAGCGGGTGCATGACGACGATAGACCCCTGAAATGTCCA TGGAAAGGTTGCAAAATGGCGTTTAAGTGGGCATGGGCTCGGACTGAGCACATAAGGGTGCATACAGGTGAGAAGCCCTACCATTGCAAAGTTGATGGAT GTGGGCTTGCATTCAGGTTTGTATCAGACTTCAGCCGCCATAGGAGAAAAACAGGACATCATGTGAACTCCCAACCAGACTGA
AA sequence Show only first row Show all	>Lus10037989 pacid=23163801 polypeptide=Lus10037989 locus=Lus10037989.g ID=Lus10037989.BGIv1.0 annot-version=v1.0 MGNVEIPKWLQGLPLAPEFRPTDTEFADPIAYISKIEKEAGAFGICKIIPPLPKPSKKYVFSNLNKTLAKSPELGDNCSSLKSGSGVDGRDGDMRAVFTT RHQELGQSIKKKGVEKETPQMVFHKQVWQSGEVYTLEQFESKSKAFAKSMLGSVKEVSPLVIEALFWKAAFEKPIYVEYANDVPGSAFGEPEGQFRYFNR RRRRRASYQSYRRHGESYNCQNNELIAVDNIVPDEVVDASIKNDPSPSSLSTSSTALSSRFVKSYNRKGESSSCNVEGTAGWKLSNSPWNLQLIARSPGS LTRYMPDDIPGVTSPMVYIGMLYSWFAWHVEDHELHSMNFLHTGSPKTWYSVPGDYAFSFEEVIRRQAYGGKLDRLASLSRLGEKTTLLSPDVVVSSGIP CCRLIQNPGEFVVTFPRAYHVGFSHGFNCGEAANFSTPQWLEVAKEAAVRRAAMNYLPMLSHQQLLYLLTMSFVLRVPRSLLPGARSSRLRDRQKEEREL SVKRAFIEDLLRENNTLRTILRKGPGCKAVIWNPDLLPRASKQSQLIDTRAAATRMEENLYHTRPEHNNNSTSNLFTEMSKYVESLNDLYADGGDISCDF QVDSGSLVCIACGILGFPFMSVVQPSDKASEESLYVDHTLISDGKATFRRVHSSADRNGFALYLLDNPHPVPDPSPALKDLKVPTGWDISNKFLRPRIFC LEHGLQICELLQSRGGANMLVICHSDFQKMKAYATSIVEEINVPFDYTQIPLESALNEDLNLIDLAIDGHDWDGRGEDWTSKMGVNLLHCVKIRKKSPST QVHHALALAGLFTEGSLSSEFSTLKWKSRRSRSRNKLNHSVSFSGGKFESKKDDALEKVSDSVAKKEEKLLCYTRRKSKTKEDCSVNGGQDRLLNRQTSR VSRNSKVGINSLEDLGVNPDGVSENHNGVQFHEATATTTAIVNSEPSVDATCSAVMSDPEAFCNSEIRDGKTAALESSERGLNSIVATDNGLLVICKDDT ENMITYDRASKRQLNLQVDRDGLVSETSGIANSPSAEAELVVAETSCTKREACNRVTSQSEQQEEGQKWPNSNHVISSNETVTTETITLNGEACEQLQDI SLVEDAVQQQIETECCDDREEMMQSKLQSAEEPDLGPLDGSGSSESVREQIDLPVTNQELASSSTSEMEDQPIPETMEACCEPCATSRTDEDSSAFKNSD GELEQVNNSFDRMPECFEIRTGSEMDEESSAVRSAVEEKRSSPPHGHGSIESASSGSIHIKVRKRRREVDQITEGNLNFKSFVRSPCERLRPRRMGRDDP STSGADLEKIPVENAVAKRSRLKRPSNDPVNNQLKKKQVTKRPHKCEIEGCGMRFETKEDLALHSRNRCPYEGCRKKFSSHRYALIHQRVHDDDRPLKCP WKGCKMAFKWAWARTEHIRVHTGEKPYHCKVDGCGLAFRFVSDFSRHRRKTGHHVNSQPD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G04240	JUMONJI	ELF6	EARLY FLOWERING 6, Zinc finger...		Lus10037989 [exp]	0	1
AT3G14120			unknown protein		Lus10015675 [exp]	1.4	0.9397
AT4G34430		ATSWI3D, CHB3	SWITCH/SUCROSE NONFERMENTING 3...		Lus10042329 [exp]	2.0	0.9472
AT2G13540		ENS, CBP80, ABH...	ENSALADA, CAP-BINDING PROTEIN ...		Lus10005012 [exp]	3.5	0.9388
AT5G46070			Guanylate-binding family prote...		Lus10015327 [exp]	6.0	0.9255
AT1G02060			Tetratricopeptide repeat (TPR)...		Lus10017658 [exp]	6.5	0.9352
AT1G05570		ATGSL6, ATGSL06...	GLUCAN SYNTHASE-LIKE 6, callos...		Lus10013744 [exp]	8.4	0.9377
AT5G51200		EMB3142	EMBRYO DEFECTIVE 3142, Protein...		Lus10005726 [exp]	10.5	0.9393
AT4G30990			ARM repeat superfamily protein...		Lus10042447 [exp]	11.4	0.9208
AT1G33390		ATFAS4	FASCIATED STEM 4, RNA helicase...		Lus10025616 [exp]	13.2	0.9167
AT5G47690			binding (.1.2.3)		Lus10039082 [exp]	14.5	0.9207

Compare expression of checked genes

Lus10037989 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.