Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G46210 377 / 8e-134 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) AT2G07110 78 / 7e-18 unknown protein AT3G61620 80 / 1e-17 RRP41 3'-5'-exoribonuclease family protein (.1.2) AT4G27490 64 / 9e-12 3'-5'-exoribonuclease family protein (.1) AT3G03710 51 / 3e-07 PDE326, PNP, RIF10 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10009221 [exp] 468 / 1e-169 AT3G46210 387 / 4e-138 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Lus10005148 [exp] 67 / 6e-13 AT3G61620 376 / 4e-133 3'-5'-exoribonuclease family protein (.1.2) Lus10003036 [exp] 66 / 3e-12 AT3G61620 370 / 9e-131 3'-5'-exoribonuclease family protein (.1.2) Lus10037395 [exp] 61 / 2e-10 AT4G27490 409 / 2e-146 3'-5'-exoribonuclease family protein (.1) Lus10041318 [exp] 52 / 9e-08 AT4G27490 414 / 4e-148 3'-5'-exoribonuclease family protein (.1) Lus10013636 [exp] 44 / 8e-05 AT3G03710 1148 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001332 [exp] 44 / 0.0001 AT3G03710 954 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Lus10001173 [exp] 40 / 0.001 AT3G07750 466 / 6e-168 3'-5'-exoribonuclease family protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.018G043600 [exp] 418 / 8e-150 AT3G46210 404 / 2e-144 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.006G239100 [exp] 284 / 2e-97 AT3G46210 295 / 4e-102 Ribosomal protein S5 domain 2-like superfamily protein (.1.2.3.4.5.6) Potri.014G094300 [exp] 65 / 4e-12 AT3G61620 379 / 6e-135 3'-5'-exoribonuclease family protein (.1.2) Potri.004G212500 [exp] 64 / 8e-12 AT4G27490 392 / 2e-139 3'-5'-exoribonuclease family protein (.1) Potri.009G010600 [exp] 62 / 4e-11 AT4G27490 394 / 3e-140 3'-5'-exoribonuclease family protein (.1) Potri.019G040100 [exp] 52 / 3e-07 AT3G03710 1197 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.013G065700 [exp] 48 / 5e-06 AT3G03710 1205 / 0.0 resistant to inhibition with FSM 10, POLYNUCLEOTIDE PHOSPHORYLASE, PIGMENT DEFECTIVE 326, polyribonucleotide nucleotidyltransferase, putative (.1) Potri.014G166200 [exp] 42 / 0.0003 AT3G07750 422 / 3e-150 3'-5'-exoribonuclease family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0329 [flax] [poplar] S5 PF01138 [flax] [poplar] RNase_PH 3' exoribonuclease family, domain 1
Representative CDS sequence Show only first row Show all	>Lus10037991 pacid=23163846 polypeptide=Lus10037991 locus=Lus10037991.g ID=Lus10037991.BGIv1.0 annot-version=v1.0 ATGGAGATAGACAGAAACGATGGCCGCACTGCGAACCAGCTGAGGCCGTTGGGTTGCTCTCGCAGCATCCTCCACCGCGCGCACGGATCCGCCAGTTGGT CTCAAGGAGAAACGAAGGTTATAGCTGCTGTTTATGGACCTAAGGCTGGAGTTAAGAAGAATGAGGACCCTGAGAAAGCTTGCATTGAAGTCATTTGGAA GCCCAAAACTGGACAAATTGGGAAGGAGGAAAAAGAGTGTGAGATGATAGTGAAGAAGACTATACAGAGCATTTGTCTTTTGACAATCAACCCAAACACA ACGACGTCAATTATAGTTCAGATGATAAAATGCTGTAGCAGCACTGCTCCTGGTGAGACTTATATGGTGTTTGTCACGGTTGTTAATGATGATGGTGCTC TTCTACCATGTGCTATAAATGCAGCATGTGCTGCCCTTGTGGATGCTGGAATTCCCATGAAGCACCTTGCTGTAGCAATTTGTTGTTGTGTTGCAGAAGG GGGATCCGTAGTACTCGACCCCACAAAGTTGGAGGAGCAGCAAATGAGAGGGTTTGCATATCTGGTATTTCCAAACTCGGGTCAATCGGCTCTACCAGAA GGACCATCTCTCGTGGATGGCGAGCCGTTAGAACATGGGATCATCACCTCTGTCACCCATGGCATTATGTCAGTGGAAGAATACTTGAAATGTGTTGAAA GAGGACGTGCAGCATGCTCGAAGCTGTCTTGTTTTGTCAGGAGGAACTTGCAATCACAACTTCCCAGTGACTCTTCCAAAGCTGCATAG
AA sequence Show only first row Show all	>Lus10037991 pacid=23163846 polypeptide=Lus10037991 locus=Lus10037991.g ID=Lus10037991.BGIv1.0 annot-version=v1.0 MEIDRNDGRTANQLRPLGCSRSILHRAHGSASWSQGETKVIAAVYGPKAGVKKNEDPEKACIEVIWKPKTGQIGKEEKECEMIVKKTIQSICLLTINPNT TTSIIVQMIKCCSSTAPGETYMVFVTVVNDDGALLPCAINAACAALVDAGIPMKHLAVAICCCVAEGGSVVLDPTKLEEQQMRGFAYLVFPNSGQSALPE GPSLVDGEPLEHGIITSVTHGIMSVEEYLKCVERGRAACSKLSCFVRRNLQSQLPSDSSKAA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G46210			Ribosomal protein S5 domain 2-...		Lus10037991 [exp]	0	1
AT4G02400			U3 ribonucleoprotein (Utp) fam...		Lus10030364 [exp]	4.9	0.9181
AT3G15460			Ribosomal RNA processing Brix ...		Lus10002403 [exp]	5.5	0.9134
AT2G41670			P-loop containing nucleoside t...		Lus10031060 [exp]	10.6	0.8898
AT1G77030			hydrolases, acting on acid anh...		Lus10028644 [exp]	17.7	0.9111
AT1G06720			P-loop containing nucleoside t...		Lus10013507 [exp]	18.2	0.8968
AT1G04945			HIT-type Zinc finger family pr...		Lus10026116 [exp]	18.9	0.8534
AT4G26600			S-adenosyl-L-methionine-depend...		Lus10032368 [exp]	22.4	0.9033
AT5G60990			DEA(D/H)-box RNA helicase fami...		Lus10031761 [exp]	22.8	0.9069
AT3G57290		ATINT6, ATEIF3E...	eukaryotic translation initiat...		Lus10018035 [exp]	23.3	0.9092
AT4G39680			SAP domain-containing protein ...		Lus10019680 [exp]	23.4	0.8654

Compare expression of checked genes

Lus10037991 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.